P38521
multicom
P38521
full_length
P38521
Results of Structure Prediction for Target Name: P38521 ( Click 
)
Domain Boundary prediction ( View )
>P38521: 1-108
| 1-60: |
M | A | K | N | R | S | R | R | L | R | K | K | M | H | I | D | E | F | Q | E | L | G | F | S | V | A | W | R | F | P | E | G | T | S | E | E | Q | I | D | K | T | V | D | D | F | I | N | E | V | I | E | P | N | K | L | A | F | D | G | S |
| 61-108: |
G | Y | L | A | W | E | G | L | I | C | M | Q | E | I | G | K | C | T | E | E | H | Q | A | I | V | R | K | W | L | E | E | R | K | L | D | E | V | R | T | S | E | L | F | D | V | W | W | D |
| 1-60: |
C | C | C | H | H | H | H | H | H | H | H | H | H | C | H | H | H | H | H | H | H | C | E | E | E | E | E | E | E | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | E | E | C | C | C |
| 61-108: |
C | C | C | C | C | C | E | E | E | E | E | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E | C | C | C | H | H | H | E | C | C |
|
| | H(Helix): 51(47.22%) | E(Strand): 19(17.59%) | C(Coil): 38(35.19%) |
| 1-60: |
E | E | E | E | E | E | E | E | B | E | E | E | B | E | B | E | B | B | E | E | B | B | B | E | B | E | B | E | B | E | E | E | B | E | E | E | B | B | E | E | B | B | E | E | B | B | E | E | B | B | E | E | B | E | B | B | B | B | B | B |
| 61-108: |
E | E | E | E | B | E | B | B | B | B | B | B | E | E | B | E | B | E | E | E | B | B | E | B | B | E | E | B | B | E | E | E | E | B | E | E | B | E | B | E | E | B | E | E | B | B | E | E |
|
| | e(Exposed): 60(55.56%) | b(Buried): 48(44.44%) |
| 1-60: |
T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-108: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
|
| | N(Normal): 101(93.52%) | T(Disorder): 7(6.48%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.99 |
98.21 |
| TopL/2 |
0.95 |
99.33 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.15 |
| TopL |
91.67 |
| Top2L |
51.85 |
| Alignment |
Number |
| N |
419 |
| Neff |
217 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9504 |
| Model 3 |
0.9492 |
| Model 4 |
0.9222 |
| Model 5 |
0.9512 |
| Average |
0.94325 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4oyi |
0.67570 |
| 5iv3 |
0.67558 |
| 4oym |
0.67385 |
| 5iv4 |
0.67322 |
| 4oya |
0.67281 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.15 |
| TopL |
87.96 |
| Top2L |
50.00 |
| Alignment |
Number |
| N |
419 |
| Neff |
217 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9504 |
| Model 3 |
0.9340 |
| Model 4 |
0.9232 |
| Model 5 |
0.9487 |
| Average |
0.93907 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5iv3 |
0.67184 |
| 4oym |
0.66953 |
| 4oya |
0.66875 |
| 5iv4 |
0.66833 |
| 4cm0 |
0.66770 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.15 |
| TopL |
90.74 |
| Top2L |
53.24 |
| Alignment |
Number |
| N |
419 |
| Neff |
217 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9492 |
| Model 2 |
0.9340 |
| Model 4 |
0.9433 |
| Model 5 |
0.9598 |
| Average |
0.94658 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5iv3 |
0.69006 |
| 5iv4 |
0.68702 |
| 4cm0 |
0.68500 |
| 4oym |
0.68450 |
| 4usu |
0.68426 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
94.44 |
| Top2L |
54.17 |
| Alignment |
Number |
| N |
419 |
| Neff |
217 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9222 |
| Model 2 |
0.9232 |
| Model 3 |
0.9433 |
| Model 5 |
0.9574 |
| Average |
0.93653 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5iv3 |
0.69416 |
| 5iv4 |
0.69155 |
| 4usu |
0.68914 |
| 4cm0 |
0.68908 |
| 4clu |
0.68879 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.15 |
| TopL |
92.59 |
| Top2L |
52.78 |
| Alignment |
Number |
| N |
419 |
| Neff |
217 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9512 |
| Model 2 |
0.9487 |
| Model 3 |
0.9598 |
| Model 4 |
0.9574 |
| Average |
0.95427 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4oym |
0.68363 |
| 4cm0 |
0.68205 |
| 4oyx |
0.68182 |
| 5iv3 |
0.68173 |
| 4oz2 |
0.68170 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
