Protein sequence

>P43935: 1-288

1-60:

M

T

A

L

I

T

Q

F

W

Q

V

E

T

A

L

K

T

A

N

P

Q

E

K

C

R

L

V

N

D

L

Y

D

N

L

P

Q

I

Q

L

I

K

L

E

D

F

P

E

I

V

P

Q

D

N

I

A

F

P

61-119:

E

K

P

L

V

A

P

K

D

V

P

K

R

S

F

A

T

E

G

Y

A

T

L

H

A

I

A

H

I

E

F

N

A

I

N

L

G

L

D

A

W

R

F

G

R

N

A

Q

E

L

G

E

G

L

A

121-179:

F

V

K

D

W

L

R

V

A

R

E

S

T

H

F

S

L

V

N

E

H

L

K

T

L

G

Y

Q

Y

G

D

F

E

A

H

A

G

L

W

E

M

A

Q

A

T

A

H

D

I

W

E

R

M

A

L

V

P

R

V

181-239:

L

E

A

R

G

L

D

A

T

P

V

L

Q

E

K

I

A

Q

R

K

D

F

A

V

N

I

L

D

I

L

R

D

E

I

G

H

V

Y

I

G

N

H

W

Y

H

A

L

S

K

R

G

L

D

A

M

K

C

241-288:

F

T

E

L

H

K

Y

R

I

V

I

F

K

G

V

I

N

T

D

A

R

I

Q

A

G

F

T

Q

H

E

L

D

W

I

Y

E

V

E

Q

T

L

K

S

Y

I

K

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

61-119:

C

E

C

H

C

H

121-179:

H

C

H

C

H

181-239:

H

C

H

C

H

C

H

241-288:

H

C

H

C

H

C

H(Helix): 188(65.28%)

E(Strand): 3(1.04%)

C(Coil): 97(33.68%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-288:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 133(46.18%)

b(Buried): 155(53.82%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

181-239:

N

241-288:

N

T

N(Normal): 286(99.31%)

T(Disorder): 2(0.69%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.94	93.58
TopL/2	0.83	87.23

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-P43935/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-P43935/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P43935/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P43935/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	74.14
TopL/2	68.75
TopL	63.19
Top2L	38.54

( Alignment file )

Alignment	Number
N	7514
Neff	587

Model comparsion

Model	TM-score
Model 2	0.8047
Model 3	0.7660
Model 4	0.7542
Model 5	0.8591
Average	0.79600

Radius Gyration

RG	RG/(2.0*L^0.4)
20.44	1.06242

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6d9f	0.60586
1mmo	0.60050
4gam	0.60048
1mhy	0.59944
1mhz	0.59906

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-P43935/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-P43935/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P43935/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P43935/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	74.14
TopL/2	66.67
TopL	61.81
Top2L	38.72

( Alignment file )

Alignment	Number
N	7514
Neff	587

Model comparsion

Model	TM-score
Model 1	0.8047
Model 3	0.7630
Model 4	0.7711
Model 5	0.7916
Average	0.78260

Radius Gyration

RG	RG/(2.0*L^0.4)
20.38	1.05931

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1mhy	0.59871
1mhz	0.59862
1mmo	0.59773
4gam	0.59764
3per	0.59717

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-P43935/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-P43935/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P43935/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P43935/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	74.14
TopL/2	69.44
TopL	62.85
Top2L	37.67

( Alignment file )

Alignment	Number
N	7514
Neff	587

Model comparsion

Model	TM-score
Model 1	0.7660
Model 2	0.7630
Model 4	0.7598
Model 5	0.7676
Average	0.76410

Radius Gyration

RG	RG/(2.0*L^0.4)
18.40	0.95639

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6d9f	0.56979
4gam	0.56937
1mmo	0.56890
1mhy	0.56813
1mhz	0.56782

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-P43935/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-P43935/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P43935/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P43935/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	74.14
TopL/2	69.44
TopL	64.58
Top2L	38.89

( Alignment file )

Alignment	Number
N	7514
Neff	587

Model comparsion

Model	TM-score
Model 1	0.7542
Model 2	0.7711
Model 3	0.7598
Model 5	0.7544
Average	0.75987

Radius Gyration

RG	RG/(2.0*L^0.4)
21.81	1.13363

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6d9f	0.56597
4gam	0.56538
1mmo	0.56518
1mhy	0.56457
1mhz	0.56413

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-P43935/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-P43935/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P43935/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P43935/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	74.14
TopL/2	70.14
TopL	62.85
Top2L	39.93

( Alignment file )

Alignment	Number
N	7514
Neff	587

Model comparsion

Model	TM-score
Model 1	0.8591
Model 2	0.7916
Model 3	0.7676
Model 4	0.7544
Average	0.79317

Radius Gyration

RG	RG/(2.0*L^0.4)
19.78	1.02812

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6d9f	0.60081
1mmo	0.60077
4gam	0.60031
1mhy	0.59824
1mhz	0.59783

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )