P44072
multicom
P44072
full_length
P44072
Results of Structure Prediction for Target Name: P44072 ( Click 
)
Domain Boundary prediction ( View )
>P44072: 1-104
| 1-60: |
M | E | N | K | A | E | R | Y | Q | K | A | V | N | I | T | D | V | L | E | Q | S | P | F | A | K | I | I | K | K | G | L | A | I | N | E | I | N | Q | K | F | N | R | I | F | P | Q | E | F | H | G | K | F | R | I | G | N | M | T | D | N |
| 61-104: |
S | I | F | I | E | T | A | N | A | I | V | R | Q | G | I | L | F | R | Q | T | E | L | L | K | L | I | Q | E | E | F | P | Q | V | T | G | F | E | I | T | I | N | P | G | F |
| 1-60: |
C | C | C | C | C | H | H | C | C | C | C | C | C | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | C | C | E | E | E | E | E | E | E | C | C | C |
| 61-104: |
E | E | E | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C |
|
| | H(Helix): 59(56.73%) | E(Strand): 16(15.38%) | C(Coil): 29(27.88%) |
| 1-60: |
E | E | E | E | E | E | E | B | E | E | E | E | E | B | E | E | B | B | E | E | B | E | B | B | E | B | B | E | E | B | E | B | B | E | E | B | B | E | E | B | E | E | B | B | E | E | E | B | E | B | E | B | B | B | B | B | B | E | E | E |
| 61-104: |
B | B | B | B | B | B | B | E | B | E | B | E | B | B | B | B | B | E | B | E | E | B | B | E | B | B | E | E | E | B | E | E | B | E | E | B | E | B | E | B | E | E | E | E |
|
| | e(Exposed): 55(52.88%) | b(Buried): 49(47.12%) |
| 1-60: |
T | N | N | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-104: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
|
| | N(Normal): 99(95.19%) | T(Disorder): 5(4.81%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.97 |
96.27 |
| TopL/2 |
0.85 |
88.84 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
90.48 |
| TopL/2 |
84.62 |
| TopL |
53.85 |
| Top2L |
28.37 |
| Alignment |
Number |
| N |
9643 |
| Neff |
3700 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.8815 |
| Model 3 |
0.9139 |
| Model 4 |
0.8751 |
| Model 5 |
0.8696 |
| Average |
0.88502 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4epl |
0.61356 |
| 4ell |
0.61348 |
| 4zad |
0.61330 |
| 1kkg |
0.61222 |
| 1n4m |
0.61120 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
90.48 |
| TopL/2 |
84.62 |
| TopL |
54.81 |
| Top2L |
28.85 |
| Alignment |
Number |
| N |
9643 |
| Neff |
3700 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8815 |
| Model 3 |
0.9040 |
| Model 4 |
0.9197 |
| Model 5 |
0.8670 |
| Average |
0.89305 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1wf3 |
0.64160 |
| 6scn |
0.63034 |
| 6sd3 |
0.62927 |
| 1kkg |
0.61569 |
| 4epl |
0.61236 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
90.48 |
| TopL/2 |
82.69 |
| TopL |
52.88 |
| Top2L |
28.37 |
| Alignment |
Number |
| N |
9643 |
| Neff |
3700 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9139 |
| Model 2 |
0.9040 |
| Model 4 |
0.8811 |
| Model 5 |
0.8698 |
| Average |
0.89220 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1wf3 |
0.61952 |
| 4zad |
0.61884 |
| 1kkg |
0.61879 |
| 4epm |
0.61777 |
| 6scn |
0.61583 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
90.48 |
| TopL/2 |
78.85 |
| TopL |
49.04 |
| Top2L |
26.44 |
| Alignment |
Number |
| N |
9643 |
| Neff |
3700 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8751 |
| Model 2 |
0.9197 |
| Model 3 |
0.8811 |
| Model 5 |
0.8636 |
| Average |
0.88487 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6scn |
0.61708 |
| 1kkg |
0.61465 |
| 6sd3 |
0.61376 |
| 1wf3 |
0.61083 |
| 4gs5 |
0.60733 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
90.48 |
| TopL/2 |
82.69 |
| TopL |
54.81 |
| Top2L |
28.37 |
| Alignment |
Number |
| N |
9643 |
| Neff |
3700 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8696 |
| Model 2 |
0.8670 |
| Model 3 |
0.8698 |
| Model 4 |
0.8636 |
| Average |
0.86750 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1kkg |
0.61888 |
| 1wf3 |
0.61740 |
| 4gs5 |
0.60565 |
| 6avh |
0.60221 |
| 2kzf |
0.60180 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
