Protein sequence

>P44137: 1-206

1-60:

M

K

T

Y

S

L

G

L

F

I

S

F

G

V

L

A

H

P

H

A

F

I

D

I

Q

T

P

I

E

N

Q

L

T

G

F

S

M

K

W

T

L

D

E

P

S

A

V

I

Y

D

M

K

Q

61-119:

A

R

T

K

A

E

K

Q

K

L

D

V

M

G

N

I

V

S

E

H

Y

F

S

Y

L

Y

D

A

Q

N

K

I

K

Y

S

P

R

P

K

N

Y

G

I

N

V

Q

G

L

Q

L

Q

Y

F

D

V

P

121-179:

L

A

H

P

Q

K

L

E

K

N

T

F

S

L

Q

T

Y

D

P

T

Y

V

A

M

T

Y

A

S

K

S

A

V

D

F

S

A

L

S

K

N

C

Q

G

K

L

I

E

P

N

V

D

E

K

I

Q

A

Y

A

S

181-206:

S

L

D

K

S

Q

K

N

E

D

S

L

G

V

M

F

A

Q

K

I

Q

C

E

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

E

C

E

C

H

C

61-119:

C

H

C

E

C

E

C

E

C

E

121-179:

C

E

C

E

C

E

C

H

181-206:

H

C

H

E

C

H(Helix): 52(25.24%)

E(Strand): 66(32.04%)

C(Coil): 88(42.72%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-206:

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 94(45.63%)

b(Buried): 112(54.37%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

T

N

61-119:

N

121-179:

N

181-206:

N

N(Normal): 197(95.63%)

T(Disorder): 9(4.37%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.98	96.93
TopL/2	0.93	96.90

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-P44137/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-P44137/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P44137/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P44137/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	92.72
Top2L	61.89

( Alignment file )

Alignment	Number
N	1434
Neff	654

Model comparsion

Model	TM-score
Model 2	0.9728
Model 3	0.9522
Model 4	0.9587
Model 5	0.8050
Average	0.92218

Radius Gyration

RG	RG/(2.0*L^0.4)
18.99	1.12926

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6uwz	0.56450
5o8f	0.56255
5ojm	0.56215
6i53	0.56196
5fjv	0.56163

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-P44137/full_length/P44137.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-P44137/full_length/P44137.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

JSmol exec jsmolApplet_M23d3 start applet null

Jmol JavaScript applet jsmolApplet_M23d3__2518507565101293__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d3__2518507565101293__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d3","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P44137","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d3__2518507565101293__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2518507565101293","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P44137"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d3 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d3__2518507565101293__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-P44137/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-P44137/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P44137/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P44137/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	99.03
TopL	93.20
Top2L	62.62

( Alignment file )

Alignment	Number
N	1434
Neff	654

Model comparsion

Model	TM-score
Model 1	0.9728
Model 3	0.9652
Model 4	0.9721
Model 5	0.8046
Average	0.92867

Radius Gyration

RG	RG/(2.0*L^0.4)
18.81	1.11855

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ojm	0.56512
5o8f	0.56512
6uwz	0.56415
6i53	0.56399
6huo	0.56272

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__2518507565101293__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__2518507565101293__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P44137","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__2518507565101293__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2518507565101293","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P44137"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__2518507565101293__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__2518507565101293__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P44137","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__2518507565101293__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2518507565101293","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P44137"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__2518507565101293__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-P44137/full_length/P44137.casp3.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-P44137/full_length/P44137.casp3.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-P44137/full_length/P44137.casp3.pdb): 158 ms

reading 1651 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1651 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

Time for openFile(work/multicom-P44137/full_length/P44137.casp2.pdb): 889 ms

reading 1651 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1651 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__2518507565101293__ ready

Model 3 vs Contact (Top L/5)

./work/multicom-P44137/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-P44137/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P44137/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P44137/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	92.72
Top2L	63.35

( Alignment file )

Alignment	Number
N	1434
Neff	654

Model comparsion

Model	TM-score
Model 1	0.9522
Model 2	0.9652
Model 4	0.9763
Model 5	0.8027
Average	0.92410

Radius Gyration

RG	RG/(2.0*L^0.4)
18.73	1.11380

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ojm	0.56601
5o8f	0.56577
6i53	0.56452
6huo	0.56340
4cof	0.56322

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-P44137/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-P44137/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P44137/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P44137/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	93.69
Top2L	64.08

( Alignment file )

Alignment	Number
N	1434
Neff	654

Model comparsion

Model	TM-score
Model 1	0.9587
Model 2	0.9721
Model 3	0.9763
Model 5	0.8018
Average	0.92722

Radius Gyration

RG	RG/(2.0*L^0.4)
18.74	1.11439

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ojm	0.56596
6uwz	0.56564
6i53	0.56497
5o8f	0.56489
6huk	0.56396

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

spinFPS is set too fast (30) -- can't keep up!

Model 5 vs Contact (Top L/5)

./work/multicom-P44137/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-P44137/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P44137/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P44137/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	98.06
TopL	88.83
Top2L	53.88

( Alignment file )

Alignment	Number
N	1434
Neff	654

Model comparsion

Model	TM-score
Model 1	0.8050
Model 2	0.8046
Model 3	0.8027
Model 4	0.8018
Average	0.80353

Radius Gyration

RG	RG/(2.0*L^0.4)
21.03	1.25057

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5hbt	0.55908
6d6t	0.55776
6d6u	0.55660
2bj0	0.55616
6i53	0.55565

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )