Protein sequence

>P44478: 1-184

1-60:

M

K

Q

I

L

A

L

V

C

G

V

I

F

S

T

W

A

H

N

L

Q

L

E

Q

S

L

P

S

V

K

V

S

E

Y

G

E

I

V

L

S

G

K

D

T

V

F

Q

P

W

G

S

A

E

L

A

G

K

61-119:

V

R

V

H

L

A

G

R

T

A

K

E

X

N

Q

S

M

I

D

V

I

K

A

S

H

F

N

P

V

K

Y

Q

T

I

N

A

D

A

I

V

G

T

G

M

F

V

K

N

G

A

K

G

121-179:

K

Q

E

N

P

H

S

Q

V

L

D

K

S

A

V

K

N

A

W

G

L

N

S

K

D

S

A

I

V

L

D

K

T

G

K

V

K

F

V

K

E

G

K

L

S

D

S

D

I

Q

T

V

I

S

L

V

N

181-184:

G

L

T

K

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

E

C

E

C

E

C

61-119:

E

C

H

C

H

C

E

C

H

121-179:

C

E

C

E

H

E

C

E

C

E

C

H

181-184:

H

C

H(Helix): 59(32.07%)

E(Strand): 46(25%)

C(Coil): 79(42.93%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-184:

E

B

E

e(Exposed): 83(45.11%)

b(Buried): 101(54.89%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

T

N

61-119:

N

121-179:

N

181-184:

N

N(Normal): 175(95.11%)

T(Disorder): 9(4.89%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.96	95.21
TopL/2	0.88	91.77

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

Note: No long-range contacts in the model!

Model 1 vs Contact (Top L/2)

./work/multicom-P44478/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P44478/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P44478/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Alignment	Number
N	11596
Neff	4213

Model comparsion

Model	TM-score
Model 2	0.9254
Model 3	0.9216
Model 4	0.8027
Model 5	0.8053
Average	0.86375

Radius Gyration

RG	RG/(2.0*L^0.4)
15.23	0.94774

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2hyx	0.75503
5cyy	0.75358
3lwa	0.74365
4pq1	0.73940
2ls5	0.72745

>P44478 MKKQILALVCGVIFSSSTWAHNLQLEQSLPS----VKVSEYGEIVL---SGKDTVFQPWGSAELAGKVRVVHHL-AG-RTAAKEXNQSMI-DVIKASHFN-PVKYQTTTIINADD-AIV-GTGMFV-KNGAKKGKQ----E-NPHSQVVLDDKSAVKNAW-----G-----LNS---------KDSAIIVLDKTGKV--KFVKEG-KL----SDSDIQTVISLVNGLTK* >4NMUA|pos:1-144 ---------------SNAADKEKQIGKEAPN----FVVT-----DL---EG-----KKIELKDLKGKGVFLNFW-GT-WCKPCEKE-PY--NELYP-KYK-EKGVEIIA-LDADE-TDI-A----V-KNFVNQYGL----K-FP---VAIDKGQKIIGTY-----G-----VGP---------L-PTSFLIDKDGKV--VEQIIG-EQ----TKEQLEGYLKKITP---* >3KCMA|pos:1-134 -----------------------LEENPAPD----FTLN-----TL---NG-----EVVKLSDLKGQVVIVNFW-AT-WCPPCREEIPSR---LNA-A-A-GKPFR-LC-VSIDE-GGK-V----AVEEFFRKTGF----T-LP---VLLDADKRVGKLY-----G-----TTG---------V-PETFVIDRHGVI--LKKVVGAEW----DHPEVIAFLNNE-----* >3OR5A|pos:1-140 ---------------------ADARPTPAPS----FSGV-----TV---DG-----KPFSSASLKGKAYIVNFF-AT-WCPPCRSEIPD--VQVQK-TWA-SRGFTFVG-IAVNE-QLP-N----V-KNY-KTQGI----I-YP---VA---TPELIRAFNGYIDGG----ITG---------I-PTSFVIDASGNV--SGVIVG-PR----SKADFDRIVKALG----* >2YP6A|pos:1-143 ----------------------IAVGKDAPD----FTLQ-----SM---DG-----KEVKLSDFKGKKVYLKFW-AS-WCGPCKKSMPEL-MELAA-KPD--RDFEILT-VIAPG-IQGEKTVEQF-PQWFQEQGY----KDIP---VLYDTKATTFQAY-----Q-----IRS---------I-PTEYLIDSQGKI--GKIQFG-AI----SNADAEAAFKEMN----* >5UM7A|pos:1-140 ---------------------HELTGQQLPE----FEMV-----DQ---AG-----YQKKSAEFYNKPMLVVEW-AS-WCPDCQKQLPEI-QKVYE-KYK-GK-IHFVM-LDMLD-SKR-ETKERA-DQYISEKDY----T-FP---YYYDTDERAADIL-----H-----VQS---------I-PTIYLVDKNQKV--KKVMTD-FH----DEAALEKQLEE------* >4PQ1A|pos:1-157 GTF-----QFHSPGGKTEIFYDEGERAPVSE----IRGE-----GL---TS-----DSVSLADYKDKIVVLNAW-GQ-WCAPCRSESDDL-QEVHE-YLG-DKG-TVVG-INVRDYSKN-----IA-QDFVKDNGI----T-YP---SIYDPPFKTAAQL-----GGVP--ASV---------V-PTTIVLDKQHRP--AAVFLR-EV----TAQDLIKVIDSL-----* >2LS5A|pos:1-154 ----------------MSLGYIVRIGEMAPD----FTIT-----LT---DG-----KQVTLSSLRGKVVMLQFT-AS-WCGVCRKEMPFIEKDIWL-KHKDNADFALIG-IDRDE-PLE-K----V-LAFAKSTGV----T-YP---LGLDPG---ADIF-----AKYALRDAG---------I-TRNVLIDREGKIVKLTRLYN-EE----EFASLVQQINEMLKEGH* >1ZZOA|pos:1-134 ------------------------TVPAQLQ----FSAK-----TL---DG-----HDFHGESLLGKPAVLWFW-AP-WCPTCQGEAPVV-GQVAA-S---HPEVTFVG-VAGLD-QVP-----AM-QEFVNKYPVK---T-F---TQLADTDGSVWANF-----G-----VTQ---------Q-PAYAFVDPHGNV--DVVR-G-RM----SQDELTRRVTALT----* >1ZYEA|pos:1-162 ----------------------PAVTQHAPY----FKGT-----AVVSGEF-----KEISLDDFKGKYLVLFFYPLD-FTFVCPTEIIAF-SDKAS-EFH-DVNCEVVA-VSVDS-HFS------H-LAWINTPRKNGGLG-HMNIALLSDLTKQISRDY-----G-----VLLEGPGLA---L-RGLFIIDPNGVI--KHLSVN-DLPVGRSVEETLRLVKAFQFVEA* >3IXRA|pos:1-159 -------------------GSHMNIGDTLNHSLLNHPLM-----LS---GS-----TCKTLSDYTNQWLVLYFY-PKDNTPGSSTEGLEF-NLLLP-QFE-QINATVLG-VSRDS-VKS------H-DSFCAKQGF----T-FP---LVSDSDAILCKAF-----D-----VIKEKTMYQVIGIERSTFLIGPTHRI--VEAWRQ-VK----VPGHAEEVLNKLKAHAE*

( Image Alignment )

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

Note: No long-range contacts in the model!

Model 2 vs Contact (Top L/2)

./work/multicom-P44478/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P44478/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P44478/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Alignment	Number
N	11596
Neff	4213

Model comparsion

Model	TM-score
Model 1	0.9254
Model 3	0.8895
Model 4	0.8021
Model 5	0.8151
Average	0.85803

Radius Gyration

RG	RG/(2.0*L^0.4)
15.16	0.94338

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2hyx	0.76880
5cyy	0.76721
6gc1	0.74346
3lwa	0.74031
4pq1	0.73983

>P44478 MKKQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIV--L---SGKDTVFQPWGSAELAGKVRVVHHL-AGRTAAKEXNQSMI-DVIKASHFN-PVKYQTTTIINADD-AI-V-GTGMFVKNGAKKGKQ----E-NPHSQVVLDDKSAVKNAW-----G-----LNS------KDSAIIVLDKTGKV--KFVKEGKL----SDSDIQTVISLVNGLTK* >2B5XA|pos:1-148 ----------------------MKLRQPMPELTGE-----KAWL---NG-----EVTREQLIGEKPTLIHFW-SISCHLCKEAMPQV-NEFRD-KYQ-DQ-LNVVA-VHMPR-SEDD-LDPGKIKETAAEHDI----T-QP---IFVDSDHALTDAF-----E-----NEY------V-PAYYVFDKTGQL--RHFQAGGS----GMKMLEKRVNRVLAETE* >3ERWA|pos:1-131 --------------------------PAVPAVFLK-----T--I---EG-----EDISIPN-KGQKTILHFW-TSWCPPCKKELPQF-QSFYD-AHP-SDSVKLVT-VNLVN-SE-Q-NQQ-VVEDFIKANKL----T-FP---IVLDSKGEL-KEY-----H-----IIT------I-PTSFLLNEKGEI--EKTKIGP-----TAEQLKEWTE-------* >1ST9A|pos:1-137 ------------------------EGSDAPNFVLE-----D--T---NG-----KRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYM-ANQYK-HFK-SQGVEIVA-VNVGE-SK-I-A----VHNFMKSYGV----N-FP---VVLDTDRQVLDAY-----D-----VSP------L-PTTFLINPEGKV--VKVVTGTM----TESMIHDYMNLIKP---* >4NMUA|pos:1-144 ---------------SNAADKEKQIGKEAPNFVVT-----D--L---EG-----KKIELKDLKGKGVFLNFW-GTWCKPCEKE-PY--NELYP-KYK-EKGVEIIA-LDADE-TD-I-A----VKNFVNQYGL----K-FP---VAIDKGQKIIGTY-----G-----VGP------L-PTSFLIDKDGKV--VEQIIGEQ----TKEQLEGYLKKITP---* >3OR5A|pos:1-140 ---------------------ADARPTPAPSFSGV-----T--V---DG-----KPFSSASLKGKAYIVNFF-ATWCPPCRSEIPD--VQVQK-TWA-SRGFTFVG-IAVNE-QL-P-N----VKNY-KTQGI----I-YP---VA---TPELIRAFNGYIDGG----ITG------I-PTSFVIDASGNV--SGVIVGPR----SKADFDRIVKALG----* >2YP6A|pos:1-143 ----------------------IAVGKDAPDFTLQ-----S--M---DG-----KEVKLSDFKGKKVYLKFW-ASWCGPCKKSMPEL-MELAA-KPD--RDFEILT-VIAPG-IQ-GEKTVEQFPQWFQEQGY----KDIP---VLYDTKATTFQAY-----Q-----IRS------I-PTEYLIDSQGKI--GKIQFGAI----SNADAEAAFKEMN----* >5UM7A|pos:1-140 ---------------------HELTGQQLPEFEMV-----D--Q---AG-----YQKKSAEFYNKPMLVVEW-ASWCPDCQKQLPEI-QKVYE-KYK-GK-IHFVM-LDMLD-SK-R-ETKERADQYISEKDY----T-FP---YYYDTDERAADIL-----H-----VQS------I-PTIYLVDKNQKV--KKVMTDFH----DEAALEKQLEE------* >4PQ1A|pos:1-157 GTF-----QFHSPGGKTEIFYDEGERAPVSEIRGE-----G--L---TS-----DSVSLADYKDKIVVLNAW-GQWCAPCRSESDDL-QEVHE-YLG-DKG-TVVG-INVRDYSK-N-----IAQDFVKDNGI----T-YP---SIYDPPFKTAAQL-----GGVP--ASV------V-PTTIVLDKQHRP--AAVFLREV----TAQDLIKVIDSL-----* >2LS5A|pos:1-154 ----------------MSLGYIVRIGEMAPDFTIT-----L--T---DG-----KQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWL-KHKDNADFALIG-IDRDE-PL-E-K----VLAFAKSTGV----T-YP---LGLDPG---ADIF-----AKYALRDAG------I-TRNVLIDREGKIVKLTRLYNEE----EFASLVQQINEMLKEGH* >1ZZOA|pos:1-134 ------------------------TVPAQLQFSAK-----T--L---DG-----HDFHGESLLGKPAVLWFW-APWCPTCQGEAPVV-GQVAA-S---HPEVTFVG-VAGLD-QV-P-----AMQEFVNKYPVK---T-F---TQLADTDGSVWANF-----G-----VTQ------Q-PAYAFVDPHGNV--DVVR-GRM----SQDELTRRVTALT----* >1ZYEA|pos:1-162 ----------------------PAVTQHAPYFKGT-----A--VVSGEF-----KEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAF-SDKAS-EFH-DVNCEVVA-VSVDS-HF-S------HLAWINTPRKNGGLG-HMNIALLSDLTKQISRDY-----G-----VLLEGPGLAL-RGLFIIDPNGVI--KHLSVNDLPVGRSVEETLRLVKAFQFVEA*

( Image Alignment )

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

Note: No long-range contacts in the model!

Model 3 vs Contact (Top L/2)

./work/multicom-P44478/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P44478/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P44478/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Alignment	Number
N	11596
Neff	4213

Model comparsion

Model	TM-score
Model 1	0.9216
Model 2	0.8895
Model 4	0.7952
Model 5	0.7904
Average	0.84918

Radius Gyration

RG	RG/(2.0*L^0.4)
15.32	0.95334

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2hyx	0.74206
5cyy	0.74119
3lwa	0.73122
2ls5	0.72954
4pq1	0.72078

>P44478 MKKQILALVCGVIFSSSTWAHNLQLEQSLPS----VKVSEYGEIVL---SGKDTVFQPWGSAELAGKVRVVHHL-AG-RTAAKEXNQSMI-DVIKASHFN-PVKYQTTTIINADD-AIV-GTGMFV-KNGAKKGKQ----E-NPHSQVVLDDKSAVKNAW-----G-----LNS---------KDSAIIVLDKTGKV--KFVKEG-KL----SDSDIQTVISLVNGLTK* >1ST9A|pos:1-137 ------------------------EGSDAPN----FVLE-----DT---NG-----KRIELSDLKGKGVFLNFW-GT-WCEPCKKEFPYM-ANQYK-HFK-SQGVEIVA-VNVGE-SKI-A----V-HNFMKSYGV----N-FP---VVLDTDRQVLDAY-----D-----VSP---------L-PTTFLINPEGKV--VKVVTG-TM----TESMIHDYMNLIKP---* >4NMUA|pos:1-144 ---------------SNAADKEKQIGKEAPN----FVVT-----DL---EG-----KKIELKDLKGKGVFLNFW-GT-WCKPCEKE-PY--NELYP-KYK-EKGVEIIA-LDADE-TDI-A----V-KNFVNQYGL----K-FP---VAIDKGQKIIGTY-----G-----VGP---------L-PTSFLIDKDGKV--VEQIIG-EQ----TKEQLEGYLKKITP---* >3KCMA|pos:1-134 -----------------------LEENPAPD----FTLN-----TL---NG-----EVVKLSDLKGQVVIVNFW-AT-WCPPCREEIPSR---LNA-A-A-GKPFR-LC-VSIDE-GGK-V----AVEEFFRKTGF----T-LP---VLLDADKRVGKLY-----G-----TTG---------V-PETFVIDRHGVI--LKKVVGAEW----DHPEVIAFLNNE-----* >3OR5A|pos:1-140 ---------------------ADARPTPAPS----FSGV-----TV---DG-----KPFSSASLKGKAYIVNFF-AT-WCPPCRSEIPD--VQVQK-TWA-SRGFTFVG-IAVNE-QLP-N----V-KNY-KTQGI----I-YP---VA---TPELIRAFNGYIDGG----ITG---------I-PTSFVIDASGNV--SGVIVG-PR----SKADFDRIVKALG----* >2YP6A|pos:1-143 ----------------------IAVGKDAPD----FTLQ-----SM---DG-----KEVKLSDFKGKKVYLKFW-AS-WCGPCKKSMPEL-MELAA-KPD--RDFEILT-VIAPG-IQGEKTVEQF-PQWFQEQGY----KDIP---VLYDTKATTFQAY-----Q-----IRS---------I-PTEYLIDSQGKI--GKIQFG-AI----SNADAEAAFKEMN----* >5UM7A|pos:1-140 ---------------------HELTGQQLPE----FEMV-----DQ---AG-----YQKKSAEFYNKPMLVVEW-AS-WCPDCQKQLPEI-QKVYE-KYK-GK-IHFVM-LDMLD-SKR-ETKERA-DQYISEKDY----T-FP---YYYDTDERAADIL-----H-----VQS---------I-PTIYLVDKNQKV--KKVMTD-FH----DEAALEKQLEE------* >4PQ1A|pos:1-157 GTF-----QFHSPGGKTEIFYDEGERAPVSE----IRGE-----GL---TS-----DSVSLADYKDKIVVLNAW-GQ-WCAPCRSESDDL-QEVHE-YLG-DKG-TVVG-INVRDYSKN-----IA-QDFVKDNGI----T-YP---SIYDPPFKTAAQL-----GGVP--ASV---------V-PTTIVLDKQHRP--AAVFLR-EV----TAQDLIKVIDSL-----* >2LS5A|pos:1-154 ----------------MSLGYIVRIGEMAPD----FTIT-----LT---DG-----KQVTLSSLRGKVVMLQFT-AS-WCGVCRKEMPFIEKDIWL-KHKDNADFALIG-IDRDE-PLE-K----V-LAFAKSTGV----T-YP---LGLDPG---ADIF-----AKYALRDAG---------I-TRNVLIDREGKIVKLTRLYN-EE----EFASLVQQINEMLKEGH* >1ZZOA|pos:1-134 ------------------------TVPAQLQ----FSAK-----TL---DG-----HDFHGESLLGKPAVLWFW-AP-WCPTCQGEAPVV-GQVAA-S---HPEVTFVG-VAGLD-QVP-----AM-QEFVNKYPVK---T-F---TQLADTDGSVWANF-----G-----VTQ---------Q-PAYAFVDPHGNV--DVVR-G-RM----SQDELTRRVTALT----* >1ZYEA|pos:1-162 ----------------------PAVTQHAPY----FKGT-----AVVSGEF-----KEISLDDFKGKYLVLFFYPLD-FTFVCPTEIIAF-SDKAS-EFH-DVNCEVVA-VSVDS-HFS------H-LAWINTPRKNGGLG-HMNIALLSDLTKQISRDY-----G-----VLLEGPGLA---L-RGLFIIDPNGVI--KHLSVN-DLPVGRSVEETLRLVKAFQFVEA* >3IXRA|pos:1-159 -------------------GSHMNIGDTLNHSLLNHPLM-----LS---GS-----TCKTLSDYTNQWLVLYFY-PKDNTPGSSTEGLEF-NLLLP-QFE-QINATVLG-VSRDS-VKS------H-DSFCAKQGF----T-FP---LVSDSDAILCKAF-----D-----VIKEKTMYQVIGIERSTFLIGPTHRI--VEAWRQ-VK----VPGHAEEVLNKLKAHAE*

( Image Alignment )

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

Note: No long-range contacts in the model!

Model 4 vs Contact (Top L/2)

./work/multicom-P44478/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P44478/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P44478/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Alignment	Number
N	11596
Neff	4213

Model comparsion

Model	TM-score
Model 1	0.8027
Model 2	0.8021
Model 3	0.7952
Model 5	0.7882
Average	0.79705

Radius Gyration

RG	RG/(2.0*L^0.4)
18.49	1.15061

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5dvb	0.73752
3tkp	0.72935
2hyx	0.72895
3tkr	0.72841
5cyy	0.72806

>P44478 MKKQILALVCGVIFSSSTWAHNLQLEQSLPS----VKVSEYGEIVL---SGKDTVFQ--P-WGS-AELAG-K-V-RVVHHL-AG-RTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIV-GTGMFVKNGAKKG-------KQ----E----NPHSQVVLDDKSAVKNAWGL-----------N------------S---------KDSAIIVLDKTGKVKFVK-EGK-----L----SDSDIQTVISLVNGLTK* >3HJPA|pos:1-158 ---------------------MVEIGEKAPE----IELV-----DT---DL-----K--K-VKIPSDFKG-K-V-VVLAFYPAA-FTSVSTKEMSTFRDSMA-KFNEVNAVVIG-ISVDPPFS------NKAFKEQN-------KI----N----FT---IVSDFNREAVKAYGVAGELPILKGYVL------------A---------K-RSVFVIDKNGIVRYKW-VSEDPTKEP----NYDEIKDVVTKLSLE--* >1ST9A|pos:1-137 ------------------------EGSDAPN----FVLE-----DT---NG-----K--R-IEL-SDLKG-K-G-VFLNFW-GT-WCEPCKKEFPYMANQYK-HFKSQGVEIVA-VNVGESKI-A----VHNFMKSY-------GV----N----FP---VVLDTDRQVLDAYDV-----------S------------P---------L-PTTFLINPEGKVVKVV-TGT-----M----TESMIHDYMNLIKP---* >4NMUA|pos:1-144 ---------------SNAADKEKQIGKEAPN----FVVT-----DL---EG-----K--K-IEL-KDLKG-K-G-VFLNFW-GT-WCKPCEKE-PY-NELYP-KYKEKGVEIIA-LDADETDI-A----VKNFVNQY-------GL----K----FP---VAIDKGQKIIGTYGV-----------G------------P---------L-PTSFLIDKDGKVVEQI-IGE-----Q----TKEQLEGYLKKITP---* >2YP6A|pos:1-143 ----------------------IAVGKDAPD----FTLQ-----SM---DG-----K--E-VKL-SDFKG-K-K-VYLKFW-AS-WCGPCKKSMPELMELAA-KPD-RDFEILT-VIAPGIQGEKTVEQFPQWFQEQ-------GY----KD---IP---VLYDTKATTFQAYQI-----------R------------S---------I-PTEYLIDSQGKIGKIQ-FGA-----I----SNADAEAAFKEMN----* >5ENUA|pos:1-157 ----------------HHHHMSVEVDRQVPD----FTAP-----AT---GG-----D----ISL-SDLKG-R-K-LVLYFY-PKDNTPGCTTEGLQFRELYP-KFKKAGAEIIG-VSRDSLRS------HDNFKAKL-------EL----P----FP---LISDADEALCALFDV-----------IKMKKMYGKEVRGI---------E-RSTFLIDADGVLRQAW-RGI-----K----VPGHVDDVLSAVQAL--* >1ZYEA|pos:1-162 ----------------------PAVTQHAPY----FKGT-----AVVSGEF-----K--E-ISL-DDFKG-K-Y-LVLFFYPLD-FTFVCPTEIIAFSDKAS-EFHDVNCEVVA-VSVDSHFS------HLAWINTP-------RKNGGLG----HMNIALLSDLTKQISRDYGV-----------L------------LEGPGLA---L-RGLFIIDPNGVIKHLS-VND-----LPVGRSVEETLRLVKAFQFVEA* >5JLYA|pos:1-164 --------------------MVLIPNKPAPE----FHGC-----AVIDGDF-----K--E-INL-KDYSG-K-Y-VVLFFYPAD-FTFVCPTEIIAFSDEVD-QFKSRNCQVIA-CSTDSKYS------HLAWTKQDRKSGGLGDM----R----I---PLLADPTKSIARAYGV-----------L------------DEEEGNA---F-RGLFIIDPKGILRQIT-VND-----KPVGRSVDETLRLLDAFQFVEK* >5EPFA|pos:1-153 ---------------------HMKTGDTVAD----FELP-----DQ---TG-----T--P-RRL-SVLLS-D-GPVVLFFY-PAAMTPGCTKEACHFRDLAK-EFAEVRASRVG-ISTDPV-K------QAKFAEVR-------RF----D----YP---LLSDAQGTVAAQFGV-----------KRGLLGKLMP---V---------K-RTTFVIDTDRKVLDVISSEF-----S----MDAHADKALATLRAIRS* >1ZOFA|pos:1-164 ----------------------MVVTKLAPD----FKAP-----AVLG-NN-----EVDEHFEL-SKNLG-KNG-VILFFWPKD-FTFVCPTEIIAFDKRVK-DFHEKGFNVIG-VSIDSEQV------HFAWKNTPVEKGGIGQV----S----F---PMVADITKSISRDYDV-----------LFEEAI-------A---------L-RGAFLIDKNMKVRHAV-IND-----LPLGRNADEMLRMVDALLHFEE* >3IXRA|pos:1-159 -------------------GSHMNIGDTLNHSLLNHPLM-----LS---GS-----T--C-KTL-SDYTN-Q-W-LVLYFY-PKDNTPGSSTEGLEFNLLLP-QFEQINATVLG-VSRDSVKS------HDSFCAKQ-------GF----T----FP---LVSDSDAILCKAFDV-----------I------------KEKTMYQVIGIERSTFLIGPTHRIVEAW-RQV-----K----VPGHAEEVLNKLKAHAE* >2I81A|pos:1-164 ---------------------PTYVGKEAPF----FKAE-----AVFG-DNSF---G--E-VNL-TQFIGKK-Y-VLLYFYPLD-FTFVCPSEIIALDKALD-AFHERNVELLG-CSVDSKYT------HLAWKKTP-------LA----KGGIGNIKHTLLSDITKSISKDYNV-----------LFDDSV-------S---------L-RAFVLIDMNGIVQHLL-VNNLAIG-R----SVDEILRIIDAIQHHEK*

( Image Alignment )

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

Note: No long-range contacts in the model!

Model 5 vs Contact (Top L/2)

./work/multicom-P44478/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P44478/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P44478/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Alignment	Number
N	11596
Neff	4213

Model comparsion

Model	TM-score
Model 1	0.8053
Model 2	0.8151
Model 3	0.7904
Model 4	0.7882
Average	0.79975

Radius Gyration

RG	RG/(2.0*L^0.4)
15.19	0.94525

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2hyx	0.85297
5cyy	0.85205
6gc1	0.75170
3lwa	0.73209
2ls5	0.71615

>P44478 MKKQILALVC-----GVIFSSSTWAHNLQLEQSLPSVK-----VSEYGEIVL---SGKDTVFQPWGS-AELAG-KVRVVHHL-AGRTAAKEXNQSMI-DVIKASHFN-PVK---YQTTTIINADD-A-IV-GTGMFVKNGAKKGKQ----E----NPHSQVVLDDKSAVKNAWG-----L-----------N-----S------KDSAIIVLDKTGKV--KFVKEGK-----L----SDSDIQTVISLVNGLTK* >2L5OA|pos:1-141 -----------------------------DSKTAPAFS-----LP-----DL---HG-----KTVSN-ADLQG-KVTLINFW-FPSCPGCVSEMPKI-IKTAN-DYK-NKN---FQVLA-VAQPI-D-P----IESVRQYVKDYGL----P----FT---VMYDADKAVGQAFG-----T-----------Q-----V------Y-PTSVLIGKKGEI--LKTYVGE-----P----DFGKLYQEIDTAWRNSD* >2HYXA|pos:5-183 IREQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLN-----TP---GN-----KPIDL-KSLRG-KVVLIDFW-AYSCINCQRAIPHV-VGWYQ-AYK-DSG---LAVIG-VHTPE-YAFE-KVPGNVAKGAANLGI----S----YP---IALDNNYATWTNYR-----N-----------R-----Y------W-PAEYLIDATGTV--RHIKFGE-----G----DYNVTETLVRQLLNDAK* >3LWAA|pos:1-164 GGT-----FQ-----FHSPDGKEIFYDEADRQQLPDIG-----GD-----SLE--EG-----TQINL-SDFEN-QVVILNAW-GQWCAPCRSESDDL-QIIHE-ELQ-AAGTPGGTVLG-INVRDYS-RD-----IAQDFVTDNGL----D----YP---SIYDPPFT-AASLGGVP--A-----------S-----V------I-PTTIVLDKQHRP--AAVFLRE-----V----TSKDVLDVALPLVDE--* >3HJPA|pos:1-158 --------------------------MVEIGEKAPEIE-----LV-----DT---DL-----KKVKIPSDFKG-KVVVLAFYPAAFTSVSTKEMSTF-RDSMA-KFN-EVN---AVVIG-ISVDP-P-FS------NKAFKEQNKI----N----FT---IVSDFNREAVKAYG-----VAGELPILKGYVL-----A------K-RSVFVIDKNGIV--RYKWVSEDPTKEP----NYDEIKDVVTKLSLE--* >1ST9A|pos:1-137 -----------------------------EGSDAPNFV-----LE-----DT---NG-----KRIEL-SDLKG-KGVFLNFW-GTWCEPCKKEFPYM-ANQYK-HFK-SQG---VEIVA-VNVGE-S-KI-A----VHNFMKSYGV----N----FP---VVLDTDRQVLDAYD-----V-----------S-----P------L-PTTFLINPEGKV--VKVVTGT-----M----TESMIHDYMNLIKP---* >2YP6A|pos:1-143 ---------------------------IAVGKDAPDFT-----LQ-----SM---DG-----KEVKL-SDFKG-KKVYLKFW-ASWCGPCKKSMPEL-MELAA-KPD--RD---FEILT-VIAPG-I-QGEKTVEQFPQWFQEQGY----KD---IP---VLYDTKATTFQAYQ-----I-----------R-----S------I-PTEYLIDSQGKI--GKIQFGA-----I----SNADAEAAFKEMN----* >2LS5A|pos:1-154 ---------------------MSLGYIVRIGEMAPDFT-----IT-----LT---DG-----KQVTL-SSLRG-KVVMLQFT-ASWCGVCRKEMPFIEKDIWL-KHKDNAD---FALIG-IDRDE-P-LE-K----VLAFAKSTGV----T----YP---LGLDPG---ADIFAKYALRD-----------A-----G------I-TRNVLIDREGKIVKLTRLYNE-----E----EFASLVQQINEMLKEGH* >1ZYEA|pos:1-162 ---------------------------PAVTQHAPYFK-----GT-----AVVSGEF-----KEISL-DDFKG-KYLVLFFYPLDFTFVCPTEIIAF-SDKAS-EFH-DVN---CEVVA-VSVDS-H-FS------HLAWINTPRKNGGLG----HMNIALLSDLTKQISRDYG-----V-----------L-----LEGPGLAL-RGLFIIDPNGVI--KHLSVND-----LPVGRSVEETLRLVKAFQFVEA* >2I81A|pos:1-164 --------------------------PTYVGKEAPFFK-----AE-----AVFG-DNSF---GEVNL-TQFIGKKYVLLYFYPLDFTFVCPSEIIAL-DKALD-AFH-ERN---VELLG-CSVDS-K-YT------HLAWKKTPLA----KGGIGNIKHTLLSDITKSISKDYN-----V-----------LFDDSVS------L-RAFVLIDMNGIV--QHLLVNNLAIG-R----SVDEILRIIDAIQHHEK*

( Image Alignment )

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )