Results of Structure Prediction for Target Name: P47394 ( Click )

Domain Boundary prediction ( View )

./work/multicom-P47394/P47394.domain_info.marker.jpeg

Protein sequence

>P47394: 1-409
1-60: MKYVKVQIINKSTIELLEDAKKGEKINLDLINQVDQTNILNTITTNQKLAWEKELSAQFI
61-119: NQQNELIKNFEIEIIKLKTMLNDKEQALLLKTKLELQNQFQKQIENYINEINKLKLTNKE
121-179: LEITNQKQLESSLKLQRNEFEEKINQQNLTIEKLKIQQARSSIWAVAKKGNELEKWCENQ
181-239: YESYADSFENCQFTRYKTEINLLDENDFPNEKADYIFSFFGEKTNKIPFLSICCEMKSEF
241-299: NDSKHKSKNKDHISKLVRDAKRANCKYAFLISELELETENDIQVRLMPTLESGVEVYLVR
301-359: PMFFILMLKLFYKLAKKLFALNRFQSVELIDKNKLNEQFKQLKDNFLTKTFLEIEKVCKS
361-409: NLVDIETLEKAVVKLRVRNERVLDQLLNKWTKKIDSFDLQLTKKITNNY

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60: CCCEEEEEECHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
61-119: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
121-179: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
181-239: HHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECC
241-299: CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEC
301-359: HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
361-409: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCC
H(Helix): 284(69.44%)E(Strand): 48(11.74%)C(Coil): 77(18.83%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60: EEEBEBEBEEEEEEEBEEEBEEEEEEEBEEEEEEEEEEBEEEEEEEEEEEEEEEEEEEBE
61-119: EEEEEEEEEEEEEBEEBEEEBEEEEEEBEEEEEEEEEEEBEEEBEEBEEEBEEBEEEEEE
121-179: EEEEEEEEEEEEBEEBEEEBEEEBEEEEEEBEEBEEEEEEEEEEEBEEBBEEBBEBBEEB
181-239: BEEBBEEBEEBEBEEEEEEEEEEEEEEEEEEEBBBBBEBBEEEEEEEEBBBBBBBBEEEE
241-299: EEEEEEEEBEEBBEEBEEEBEEEEBEBBBBBBBBBEEEEBEBEBEEEEEBEEBEEBBBBB
301-359: BBBBBBBBBBBBEBBEEBBEEEEEEEBEBEEEEEBBEEBEEBEEEBBEEBBEEBEEEBEE
361-409: BEEBBEEBEEBBEEBEEBBEEBBEEBBEEBEEEBEEBEBEBEEEBEEEE
e(Exposed): 285(69.68%)b(Buried): 124(30.32%)

Disorder prediction (N: Normal T: Disorder)

1-60: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
61-119: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
121-179: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
181-239: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
241-299: TNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
301-359: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
361-409: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
N(Normal): 406(99.27%)T(Disorder): 3(0.73%)

Select domain

Predicted contact map and distance map

   

Predicted distance map

./work/contact_dist/P47394_d.jpg

   

Predicted contact map

./work/contact_dist/P47394_c.jpg

Predicted Top 1 Tertiary structure

   

Predicted Top 2 Tertiary structure

   

Predicted Top 3 Tertiary structure

   

Predicted Top 4 Tertiary structure

   

Predicted Top 5 Tertiary structure

   
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References

[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.