Protein sequence

>P47394: 1-409

1-60:

M

K

Y

V

K

V

Q

I

N

K

S

T

I

E

L

E

D

A

K

G

E

K

I

N

L

D

L

I

N

Q

V

D

Q

T

N

I

L

N

T

I

T

N

Q

K

L

A

W

E

K

E

L

S

A

Q

F

I

61-119:

N

Q

N

E

L

I

K

N

F

E

I

E

I

K

L

K

T

M

L

N

D

K

E

Q

A

L

K

T

K

L

E

L

Q

N

Q

F

Q

K

Q

I

E

N

Y

I

N

E

I

N

K

L

K

L

T

N

K

E

121-179:

L

E

I

T

N

Q

K

Q

L

E

S

L

K

L

Q

R

N

E

F

E

K

I

N

Q

N

L

T

I

E

K

L

K

I

Q

A

R

S

I

W

A

V

A

K

G

N

E

L

E

K

W

C

E

N

Q

181-239:

Y

E

S

Y

A

D

S

F

E

N

C

Q

F

T

R

Y

K

T

E

I

N

L

D

E

N

D

F

P

N

E

K

A

D

Y

I

F

S

F

G

E

K

T

N

K

I

P

F

L

S

I

C

E

M

K

S

E

F

241-299:

N

D

S

K

H

K

S

K

N

K

D

H

I

S

K

L

V

R

D

A

K

R

A

N

C

K

Y

A

F

L

I

S

E

L

E

L

E

T

E

N

D

I

Q

V

R

L

M

P

T

L

E

S

G

V

E

V

Y

L

V

R

301-359:

P

M

F

I

L

M

L

K

L

F

Y

K

L

A

K

L

F

A

L

N

R

F

Q

S

V

E

L

I

D

K

N

K

L

N

E

Q

F

K

Q

L

K

D

N

F

L

T

K

T

F

L

E

I

E

K

V

C

K

S

361-409:

N

L

V

D

I

E

T

L

E

K

A

V

K

L

R

V

R

N

E

R

V

L

D

Q

L

N

K

W

T

K

I

D

S

F

D

L

Q

L

T

K

I

T

N

Y

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

C

H

C

H

61-119:

H

121-179:

H

181-239:

H

C

E

C

E

C

E

C

E

C

241-299:

C

H

C

E

C

E

C

E

C

301-359:

H

C

H

361-409:

H

C

E

H

C

H(Helix): 284(69.44%)

E(Strand): 48(11.74%)

C(Coil): 77(18.83%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

241-299:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

301-359:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

361-409:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 285(69.68%)

b(Buried): 124(30.32%)

Disorder prediction (N: Normal T: Disorder)

1-60:

N

61-119:

N

121-179:

N

181-239:

N

T

241-299:

T

N

T

N

301-359:

N

361-409:

N

N(Normal): 406(99.27%)

T(Disorder): 3(0.73%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.81	80.99
TopL/2	0.59	62.06

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-P47394/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-P47394/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P47394/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P47394/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	97.56
TopL/2	69.76
TopL	39.12
Top2L	20.54

( Alignment file )

Alignment	Number
N	2094
Neff	397

Model comparsion

Model	TM-score
Model 2	0.7292
Model 3	0.6955
Model 4	0.6251
Model 5	0.6687
Average	0.67963

Radius Gyration

RG	RG/(2.0*L^0.4)
61.70	2.78606

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6rlb	0.43390
6sc2	0.43090
6i27	0.42086
5nvu	0.41701
5i6i	0.41392

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Model 2 vs Contact (Top L/5)

./work/multicom-P47394/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-P47394/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P47394/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P47394/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	97.56
TopL/2	69.27
TopL	37.90
Top2L	20.42

( Alignment file )

Alignment	Number
N	2094
Neff	397

Model comparsion

Model	TM-score
Model 1	0.7292
Model 3	0.7270
Model 4	0.5332
Model 5	0.7015
Average	0.67273

Radius Gyration

RG	RG/(2.0*L^0.4)
58.85	2.65737

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1jx2	0.40164

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Model 3 vs Contact (Top L/5)

./work/multicom-P47394/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-P47394/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P47394/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P47394/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	97.56
TopL/2	70.24
TopL	40.10
Top2L	21.39

( Alignment file )

Alignment	Number
N	2094
Neff	397

Model comparsion

Model	TM-score
Model 1	0.6955
Model 2	0.7270
Model 4	0.5574
Model 5	0.7450
Average	0.68122

Radius Gyration

RG	RG/(2.0*L^0.4)
58.86	2.65782

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6i26	0.44115
6i27	0.40031

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Model 4 vs Contact (Top L/5)

./work/multicom-P47394/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-P47394/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P47394/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P47394/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	96.34
TopL/2	68.78
TopL	37.90
Top2L	20.05

( Alignment file )

Alignment	Number
N	2094
Neff	397

Model comparsion

Model	TM-score
Model 1	0.6251
Model 2	0.5332
Model 3	0.5574
Model 5	0.5427
Average	0.56460

Radius Gyration

RG	RG/(2.0*L^0.4)
60.79	2.74497

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6g2i	0.43183
6g2h	0.43171
3vkg	0.42345
3vkh	0.42045
6i26	0.40729

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Model 5 vs Contact (Top L/5)

./work/multicom-P47394/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-P47394/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P47394/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P47394/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	97.56
TopL/2	69.76
TopL	39.12
Top2L	21.15

( Alignment file )

Alignment	Number
N	2094
Neff	397

Model comparsion

Model	TM-score
Model 1	0.6687
Model 2	0.7015
Model 3	0.7450
Model 4	0.5427
Average	0.66448

Radius Gyration

RG	RG/(2.0*L^0.4)
50.37	2.27446

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6orb	0.42228
6i26	0.41542
6jsh	0.40732
6or5	0.40311
6hyp	0.40170

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )