Protein sequence

>P47635: 1-524

1-60:

M

L

K

I

D

M

W

F

K

L

K

S

L

G

F

S

L

I

S

L

Q

A

L

A

S

C

S

A

V

S

P

V

P

V

P

I

E

K

N

D

S

T

D

N

A

T

P

F

K

D

E

Q

S

D

Q

G

61-119:

T

E

V

N

Q

P

K

V

E

Q

K

V

Y

N

R

N

F

K

F

N

T

S

F

I

P

E

S

D

I

Y

R

K

G

Y

D

L

T

F

T

L

N

F

T

S

F

S

N

D

S

Y

G

T

G

W

L

I

D

W

121-179:

K

G

D

E

N

T

Q

K

Q

G

S

F

A

Y

I

A

T

N

L

H

V

A

D

G

L

R

N

I

G

D

H

W

P

Y

S

K

T

D

Q

R

E

F

N

E

Y

E

S

T

V

Y

F

S

I

G

K

Y

T

181-239:

N

K

T

D

I

T

K

L

Y

Q

E

K

L

E

Q

R

K

V

N

D

S

L

S

I

Q

T

S

N

I

P

K

T

A

Y

T

A

T

N

F

L

K

G

V

N

S

I

K

P

V

Y

A

D

F

A

V

I

E

L

241-299:

E

L

N

L

E

N

L

R

D

W

Q

I

F

N

E

F

I

K

P

A

I

N

T

Y

K

S

L

G

D

S

T

N

I

F

E

T

K

D

L

E

Q

H

W

N

H

S

H

Y

L

G

Y

P

V

L

E

R

G

Y

D

301-359:

Q

N

R

L

E

Q

K

E

F

A

R

T

H

N

F

N

Q

K

S

Q

L

W

S

K

N

T

Y

L

V

S

T

A

K

E

I

P

V

I

T

K

N

A

R

K

D

G

Q

I

G

S

E

I

F

S

K

T

Q

361-419:

D

S

H

V

D

K

V

I

K

H

E

K

G

I

V

T

F

Q

N

F

K

N

F

K

L

K

Y

H

D

K

E

Y

Q

Y

G

Y

G

L

M

L

D

T

N

L

P

G

S

G

S

A

I

F

N

Q

421-479:

K

I

N

S

I

Y

F

G

V

L

E

V

Y

K

N

S

K

T

H

K

D

N

I

G

M

S

Q

L

R

T

S

K

R

E

S

E

K

N

K

T

R

T

N

R

D

K

F

Q

H

Y

D

L

I

F

G

D

S

481-524:

N

T

K

S

F

Y

A

Q

F

A

K

H

N

T

H

L

Y

D

Q

I

K

S

E

K

E

F

K

Y

V

D

K

N

Q

K

T

P

F

L

R

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

C

H

E

H

C

61-119:

C

H

C

E

C

E

121-179:

C

E

C

H

C

E

C

181-239:

C

E

C

E

H

C

H

E

241-299:

E

C

H

C

E

C

301-359:

C

H

C

361-419:

C

E

C

E

C

E

C

E

C

E

C

421-479:

C

E

C

H

C

E

C

481-524:

C

H

C

E

C

E

C

H(Helix): 87(16.6%)

E(Strand): 85(16.22%)

C(Coil): 352(67.18%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-239:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-299:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

301-359:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

361-419:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

421-479:

B

E

B

E

B

E

B

E

481-524:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 289(55.15%)

b(Buried): 235(44.85%)

Disorder prediction (N: Normal T: Disorder)

1-60:

N

T

61-119:

T

N

121-179:

N

181-239:

N

241-299:

N

301-359:

N

361-419:

N

421-479:

N

481-524:

N

N(Normal): 493(94.08%)

T(Disorder): 31(5.92%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.84	83.97
TopL/2	0.61	64.81

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-P47635/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-P47635/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P47635/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P47635/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	48.57
TopL/2	45.42
TopL	30.34
Top2L	21.37

( Alignment file )

Alignment	Number
N	881
Neff	165

Model comparsion

Model	TM-score
Model 2	0.5224
Model 3	0.5803
Model 4	0.5273
Model 5	0.4820
Average	0.52800

Radius Gyration

RG	RG/(2.0*L^0.4)
26.03	1.06425

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
	significant

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-P47635/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-P47635/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P47635/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P47635/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	41.90
TopL/2	38.17
TopL	25.38
Top2L	18.03

( Alignment file )

Alignment	Number
N	881
Neff	165

Model comparsion

Model	TM-score
Model 1	0.5224
Model 3	0.5398
Model 4	0.5841
Model 5	0.5216
Average	0.54197

Radius Gyration

RG	RG/(2.0*L^0.4)
26.94	1.10146

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
	significant

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-P47635/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-P47635/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P47635/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P47635/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	57.14
TopL/2	51.15
TopL	36.45
Top2L	26.72

( Alignment file )

Alignment	Number
N	881
Neff	165

Model comparsion

Model	TM-score
Model 1	0.5803
Model 2	0.5398
Model 4	0.5334
Model 5	0.5095
Average	0.54075

Radius Gyration

RG	RG/(2.0*L^0.4)
26.51	1.08387

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
	significant

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-P47635/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-P47635/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P47635/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P47635/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	48.57
TopL/2	45.42
TopL	32.06
Top2L	22.71

( Alignment file )

Alignment	Number
N	881
Neff	165

Model comparsion

Model	TM-score
Model 1	0.5273
Model 2	0.5841
Model 3	0.5334
Model 5	0.5194
Average	0.54105

Radius Gyration

RG	RG/(2.0*L^0.4)
26.76	1.09410

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
	significant

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-P47635/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-P47635/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P47635/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P47635/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	45.71
TopL/2	38.93
TopL	28.44
Top2L	21.85

( Alignment file )

Alignment	Number
N	881
Neff	165

Model comparsion

Model	TM-score
Model 1	0.4820
Model 2	0.5216
Model 3	0.5095
Model 4	0.5194
Average	0.50813

Radius Gyration

RG	RG/(2.0*L^0.4)
24.00	0.98125

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
	significant

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )