P62066
multicom
P62066
full_length
P62066
Results of Structure Prediction for Target Name: P62066 ( Click 
)
Domain Boundary prediction ( View )
>P62066: 1-106
| 1-60: |
M | S | V | A | R | F | S | C | G | K | T | A | Q | L | S | K | K | Q | T | G | Y | Y | S | P | E | I | F | P | S | T | G | K | D | C | N | P | Q | P | A | N | C | L | K | D | Q | Y | V | L | R | H | C | C | V | D | D | R | S | G | K | M |
| 61-106: |
G | Y | S | V | K | F | L | V | L | T | R | M | D | T | E | T | A | S | L | F | H | C | K | P | C | Y | S | K | M | T | F | T | I | Y | H | P | L | T | H | S | F | F | T | S | C | W |
| 1-60: |
C | E | E | E | E | E | E | C | C | C | C | E | E | E | C | C | C | C | C | C | C | C | C | C | C | E | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C |
| 61-106: |
E | E | E | E | E | E | E | E | E | E | E | C | C | C | C | E | C | E | E | E | C | C | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | E | E | C | C | C | C |
| |
| | H(Helix): 2(1.89%) | E(Strand): 39(36.79%) | C(Coil): 65(61.32%) |
| 1-60: |
E | E | B | B | E | B | B | B | E | E | E | E | E | B | E | E | E | E | E | E | E | B | E | E | E | E | B | E | E | E | E | E | E | B | E | E | E | E | E | E | B | E | E | E | E | B | B | B | E | B | B | B | B | E | E | E | E | E | E | B |
| 61-106: |
E | B | B | B | B | B | B | B | B | B | E | B | E | E | E | E | B | B | B | B | E | B | E | E | B | B | E | E | B | B | B | B | B | B | B | E | B | E | E | E | B | B | E | E | B | E |
| |
| | e(Exposed): 60(56.6%) | b(Buried): 46(43.4%) |
| 1-60: |
T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-106: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| |
| | N(Normal): 105(99.06%) | T(Disorder): 1(0.94%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.11 |
14.31 |
| TopL/2 |
0.10 |
12.47 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
19.05 |
| TopL/2 |
15.09 |
| TopL |
11.32 |
| Top2L |
9.43 |
| Alignment |
Number |
| N |
46 |
| Neff |
10 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.4102 |
| Model 3 |
0.4028 |
| Model 4 |
0.3945 |
| Model 5 |
0.4578 |
| Average |
0.41633 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5myf |
0.49411 |
| 2g77 |
0.47935 |
| 6h4b |
0.47133 |
| 5mil |
0.47060 |
| 5mwl |
0.46879 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
4.76 |
| TopL/2 |
3.77 |
| TopL |
5.66 |
| Top2L |
6.13 |
| Alignment |
Number |
| N |
46 |
| Neff |
10 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4102 |
| Model 3 |
0.3713 |
| Model 4 |
0.3878 |
| Model 5 |
0.3240 |
| Average |
0.37333 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4dod |
0.52410 |
| 2xfg |
0.52305 |
| 4tf4 |
0.52222 |
| 3wc3 |
0.52166 |
| 1js4 |
0.52162 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
14.29 |
| TopL/2 |
9.43 |
| TopL |
7.55 |
| Top2L |
9.43 |
| Alignment |
Number |
| N |
46 |
| Neff |
10 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4028 |
| Model 2 |
0.3713 |
| Model 4 |
0.2989 |
| Model 5 |
0.2772 |
| Average |
0.33755 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2f3o |
0.47354 |
| 2xqo |
0.47290 |
| 3w31 |
0.46108 |
| 1pn0 |
0.46104 |
| 1foh |
0.46004 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
14.29 |
| TopL/2 |
7.55 |
| TopL |
4.72 |
| Top2L |
6.60 |
| Alignment |
Number |
| N |
46 |
| Neff |
10 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.3945 |
| Model 2 |
0.3878 |
| Model 3 |
0.2989 |
| Model 5 |
0.3878 |
| Average |
0.36725 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5c5y |
0.48067 |
| 2pa5 |
0.47788 |
| 5c2x |
0.47497 |
| 1p1x |
0.47344 |
| 1jcj |
0.47325 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
0.00 |
| TopL/2 |
13.21 |
| TopL |
10.38 |
| Top2L |
10.85 |
| Alignment |
Number |
| N |
46 |
| Neff |
10 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4578 |
| Model 2 |
0.3240 |
| Model 3 |
0.2772 |
| Model 4 |
0.3878 |
| Average |
0.36170 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4n4a |
0.51388 |
| 4n49 |
0.50732 |
| 4n48 |
0.50646 |
| 4fdu |
0.50501 |
| 6h5x |
0.50176 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
