Protein sequence

>P64524: 1-124

1-60:

M

K

T

L

P

V

L

P

G

Q

A

S

R

P

S

P

V

E

I

W

Q

I

L

S

R

L

D

Q

H

Y

G

L

T

L

N

D

T

P

F

A

D

E

R

V

I

E

Q

H

I

E

A

G

I

S

L

C

61-119:

D

A

V

N

F

L

V

E

K

Y

A

L

V

R

T

D

Q

P

G

F

S

A

C

T

R

S

Q

L

I

N

S

I

D

I

L

R

A

R

A

T

G

L

M

T

R

D

N

Y

R

T

V

N

I

T

L

G

K

Y

121-124:

P

E

A

K

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

E

C

H

C

H

61-119:

H

C

E

C

H

C

E

C

E

C

121-124:

C

H(Helix): 51(41.13%)

E(Strand): 8(6.45%)

C(Coil): 65(52.42%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-124:

E

e(Exposed): 59(47.58%)

b(Buried): 65(52.42%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

T

121-124:

T

N(Normal): 107(86.29%)

T(Disorder): 17(13.71%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.46	47.71
TopL/2	0.34	36.85

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-P64524/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-P64524/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P64524/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P64524/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	72.00
TopL/2	54.84
TopL	39.52
Top2L	23.39

( Alignment file )

Alignment	Number
N	1086
Neff	44

Model comparsion

Model	TM-score
Model 2	0.9054
Model 3	0.8977
Model 4	0.9181
Model 5	0.9225
Average	0.91092

Radius Gyration

RG	RG/(2.0*L^0.4)
15.48	1.12922

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3dsi	0.56648
3dsj	0.56596
2rch	0.56510
3dsk	0.56491
3cli	0.56458

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__160197849336184__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__160197849336184__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P64524","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__160197849336184__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"160197849336184","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P64524"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__160197849336184__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__160197849336184__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P64524","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__160197849336184__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"160197849336184","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P64524"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__160197849336184__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-P64524/full_length/P64524.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-P64524/full_length/P64524.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

Time for openFile(work/multicom-P64524/full_length/P64524.casp2.pdb): 458 ms

reading 977 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

977 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__160197849336184__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-P64524/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-P64524/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P64524/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P64524/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	76.00
TopL/2	56.45
TopL	40.32
Top2L	23.39

( Alignment file )

Alignment	Number
N	1086
Neff	44

Model comparsion

Model	TM-score
Model 1	0.9054
Model 3	0.9409
Model 4	0.9381
Model 5	0.9218
Average	0.92655

Radius Gyration

RG	RG/(2.0*L^0.4)
15.31	1.11682

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3dsj	0.55727
2rcm	0.55687
3dsi	0.55681
3dsk	0.55653
3cli	0.55524

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-P64524/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-P64524/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P64524/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P64524/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	76.00
TopL/2	54.84
TopL	37.90
Top2L	22.18

( Alignment file )

Alignment	Number
N	1086
Neff	44

Model comparsion

Model	TM-score
Model 1	0.8977
Model 2	0.9409
Model 4	0.9269
Model 5	0.9188
Average	0.92107

Radius Gyration

RG	RG/(2.0*L^0.4)
15.29	1.11536

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2o36	0.55800
2rcm	0.55740
3dsi	0.55706
1s4b	0.55696
3dsk	0.55685

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

spinFPS is set too fast (30) -- can't keep up!

Model 4 vs Contact (Top L/5)

./work/multicom-P64524/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-P64524/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P64524/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P64524/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	72.00
TopL/2	54.84
TopL	38.71
Top2L	22.98

( Alignment file )

Alignment	Number
N	1086
Neff	44

Model comparsion

Model	TM-score
Model 1	0.9181
Model 2	0.9381
Model 3	0.9269
Model 5	0.9194
Average	0.92563

Radius Gyration

RG	RG/(2.0*L^0.4)
15.31	1.11682

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3dsi	0.55581
3dsj	0.55518
3cli	0.55459
2rch	0.55435
3dsk	0.55415

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-P64524/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-P64524/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P64524/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P64524/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	72.00
TopL/2	53.23
TopL	39.52
Top2L	23.79

( Alignment file )

Alignment	Number
N	1086
Neff	44

Model comparsion

Model	TM-score
Model 1	0.9225
Model 2	0.9218
Model 3	0.9188
Model 4	0.9194
Average	0.92063

Radius Gyration

RG	RG/(2.0*L^0.4)
15.32	1.11755

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3dsi	0.55608
3cli	0.55607
3dsj	0.55588
3dsk	0.55526
2rch	0.55490

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )