P64663
multicom
P64663
full_length
P64663
Results of Structure Prediction for Target Name: P64663 ( Click 
)
Domain Boundary prediction ( View )
>P64663: 1-171
| 1-60: |
M | E | K | L | P | K | K | R | V | S | K | T | K | S | Q | K | L | I | H | S | L | T | T | Q | K | N | R | A | F | L | K | K | I | S | A | N | E | M | L | L | E | L | E | K | G | A | F | K | K | N | E | A | Y | F | I | S | D | E | E | D |
| 61-119: |
K | N | Y | V | L | V | P | D | N | V | I | S | L | L | A | E | N | A | R | K | A | F | E | A | R | L | R | A | E | L | E | R | D | I | I | T | Q | A | P | I | D | F | E | D | V | R | E | V | S | L | Q | L | L | E | N | L | R | Q | K | D |
| 121-171: |
G | N | L | P | N | I | N | T | L | N | F | V | K | Q | I | K | K | E | H | P | N | L | F | F | N | F | D | N | M | F | K | Q | P | P | F | N | E | N | N | F | E | N | F | D | N | S | D | E | E | N | F |
| 1-60: |
C | C | C | C | C | H | H | H | H | C | C | C | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | E | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | E | E | E | E | C | C | C | C |
| 61-119: |
C | E | E | E | E | E | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C |
| 121-171: |
C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | E | E | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| |
| | H(Helix): 78(45.61%) | E(Strand): 22(12.87%) | C(Coil): 71(41.52%) |
| 1-60: |
E | E | E | B | E | E | E | E | B | E | E | E | E | B | E | E | B | B | E | E | B | E | E | E | E | B | B | B | E | B | E | E | B | E | E | E | E | B | B | B | E | B | E | E | E | E | B | E | E | E | E | B | B | B | B | E | B | E | E | E |
| 61-119: |
E | E | B | B | B | B | B | E | E | B | B | E | E | B | B | E | B | B | E | E | B | E | E | E | E | B | E | B | E | B | B | E | E | B | B | E | E | B | E | B | E | B | E | B | B | B | B | B | B | B | E | E | B | E | E | B | E | E | E | E |
| 121-171: |
E | E | B | E | E | B | E | B | E | E | B | B | E | E | B | E | E | E | B | B | E | B | B | B | B | B | E | E | B | B | E | E | E | E | E | E | E | E | E | B | E | E | B | E | E | E | E | E | E | E | E |
| |
| | e(Exposed): 103(60.23%) | b(Buried): 68(39.77%) |
| 1-60: |
T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-171: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| |
| | N(Normal): 147(85.96%) | T(Disorder): 24(14.04%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.60 |
61.35 |
| TopL/2 |
0.39 |
42.21 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
61.76 |
| TopL/2 |
29.07 |
| TopL |
16.37 |
| Top2L |
9.65 |
| Alignment |
Number |
| N |
197 |
| Neff |
38 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.6016 |
| Model 3 |
0.4784 |
| Model 4 |
0.5258 |
| Model 5 |
0.5813 |
| Average |
0.54678 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4xfv |
0.48334 |
| 5m2n |
0.47967 |
| 3jb9 |
0.47103 |
| 6ahd |
0.47007 |
| 5zwo |
0.46882 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
58.82 |
| TopL/2 |
27.91 |
| TopL |
16.96 |
| Top2L |
9.65 |
| Alignment |
Number |
| N |
197 |
| Neff |
38 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6016 |
| Model 3 |
0.4436 |
| Model 4 |
0.5567 |
| Model 5 |
0.4835 |
| Average |
0.52135 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4lmh |
0.49530 |
| 6k4q |
0.48664 |
| 6rw6 |
0.47769 |
| 6cc4 |
0.47191 |
| 6rw8 |
0.47123 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
61.76 |
| TopL/2 |
29.07 |
| TopL |
16.96 |
| Top2L |
9.65 |
| Alignment |
Number |
| N |
197 |
| Neff |
38 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4784 |
| Model 2 |
0.4436 |
| Model 4 |
0.4546 |
| Model 5 |
0.5237 |
| Average |
0.47507 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ajg |
0.57405 |
| 6ajj |
0.57386 |
| 6ajh |
0.57329 |
| 6ajf |
0.56642 |
| 6aji |
0.55912 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
58.82 |
| TopL/2 |
29.07 |
| TopL |
16.37 |
| Top2L |
12.28 |
| Alignment |
Number |
| N |
197 |
| Neff |
38 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5258 |
| Model 2 |
0.5567 |
| Model 3 |
0.4546 |
| Model 5 |
0.5769 |
| Average |
0.52850 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2qvw |
0.48579 |
| 2ffl |
0.48334 |
| 2wvw |
0.47461 |
| 3lw5 |
0.47334 |
| 6kif |
0.47139 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
61.76 |
| TopL/2 |
29.07 |
| TopL |
17.54 |
| Top2L |
10.23 |
| Alignment |
Number |
| N |
197 |
| Neff |
38 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5813 |
| Model 2 |
0.4835 |
| Model 3 |
0.5237 |
| Model 4 |
0.5769 |
| Average |
0.54135 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5u74 |
0.53893 |
| 5u73 |
0.53458 |
| 6e1h |
0.53352 |
| 6dmo |
0.53284 |
| 6uox |
0.53139 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
