Results of Structure Prediction for Target Name: P71624 ( Click )

Domain Boundary prediction ( View )

./work/multicom-P71624/P71624.domain_info.marker.jpeg

Protein sequence

>P71624: 1-181
1-60: MTPALKEWSAAVHALLDGRQTVLLRKGGIGEKRFEVAAHEFLLFPTVAHSHAERVRPEHR
61-119: DLLGPAAADSTDECVLLRAAAKVVAALPVNRPEGLDAIEDLHIWTAESVRADRLDFRPKH
121-179: RLAVLVVSAIPLAEPVRLARTPEYGGCTSWVQLPVTPTLAAPVHDEAALAEVAARVREAV
181-181: G

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60: CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCEEEEECCHHCCCHHHCCHHHH
61-119: HHHCHCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHHHCCCEECCHHHHHHHHHHCCCCC
121-179: CEEEEEEEEEECCCCCECCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
181-181: C
H(Helix): 58(32.04%)E(Strand): 45(24.86%)C(Coil): 78(43.09%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60: EEEBBEEBBBBBEBBEEEEBBBBBBEEEBEEEEBEBEEEBBBBBBBBEBEEEEEBEEEBE
61-119: EEBEEEBEEEEEEEBEBEBBBEBBEBBEBEEEEBBEEBEEBBBBBEEBBEEEBBEBEEEE
121-179: EBBBBBBBBBEBEEBBEBEEEEEBEBBEBBBEBEEEBEEBEBBBEEEEBEEBBEEBEEEB
181-181: E
e(Exposed): 97(53.59%)b(Buried): 84(46.41%)

Disorder prediction (N: Normal T: Disorder)

1-60: TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
61-119: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
121-179: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
181-181: N
N(Normal): 180(99.45%)T(Disorder): 1(0.55%)

Select domain

Predicted contact map and distance map

   

Predicted distance map

./work/contact_dist/P71624_d.jpg

   

Predicted contact map

./work/contact_dist/P71624_c.jpg

Predicted Top 1 Tertiary structure

   

Predicted Top 2 Tertiary structure

   

Predicted Top 3 Tertiary structure

   

Predicted Top 4 Tertiary structure

   

Predicted Top 5 Tertiary structure

   

References

[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.