P76206
multicom
P76206
full_length
P76206
Results of Structure Prediction for Target Name: P76206 ( Click 
)
Domain Boundary prediction ( View )
>P76206: 1-252
| 1-60: |
M | K | L | L | K | T | V | P | A | I | V | M | L | A | G | G | M | F | A | S | L | N | A | A | A | D | D | S | V | F | T | V | M | D | D | P | A | S | A | K | K | P | F | E | G | N | L | N | A | G | Y | L | A | Q | S | G | N | T | K | S |
| 61-119: |
S | S | L | T | A | D | T | T | M | T | W | Y | G | H | T | T | A | W | S | L | W | G | N | A | S | N | T | S | S | N | D | E | R | S | S | E | K | Y | A | A | G | G | R | S | R | F | N | L | T | D | Y | D | Y | L | F | G | Q | A | S | W |
| 121-179: |
L | T | D | R | Y | N | G | Y | R | E | R | D | V | L | T | A | G | Y | G | R | Q | F | L | N | G | P | V | H | S | F | R | F | E | F | G | P | G | V | R | Y | D | K | Y | T | D | N | A | S | E | T | Q | P | L | G | Y | A | S | G | A | Y |
| 181-239: |
A | W | Q | L | T | D | N | A | K | F | T | Q | G | V | S | V | F | G | A | E | D | T | T | L | N | S | E | S | A | L | N | V | A | I | N | E | H | F | G | L | K | V | A | Y | N | V | T | W | N | S | E | P | P | E | S | A | P | E | H | T |
| 241-252: |
D | R | R | T | T | L | S | L | G | Y | S | M |
| 1-60: |
C | C | C | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | H | H | H | H | H | C | C | C | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C |
| 61-119: |
C | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | C | C | C | E | C | C | C | C | C | E | E | E | E | E | E | E | E | E |
| 121-179: |
C | C | C | C | H | C | C | C | C | E | E | E | E | E | C | C | C | C | C | E | E | E | E | E | C | C | C | C | E | E | E | E | E | E | C | C | C | E | E | E | E | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E |
| 181-239: |
E | E | E | E | C | C | C | E | E | E | E | E | E | E | E | E | E | C | C | C | C | E | E | E | E | E | E | E | E | E | E | E | E | E | C | C | C | E | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C |
| 241-252: |
C | E | E | E | E | E | E | E | E | E | C | C |
| |
| | H(Helix): 23(9.13%) | E(Strand): 120(47.62%) | C(Coil): 109(43.25%) |
| 1-60: |
E | E | B | B | B | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | B | B | E | B | B | E | E | E | E | E | E | E | E | E | B | E | B | E | B | B | B | B | B | B | B | E | E | B | B | E | E | E |
| 61-119: |
E | E | B | E | B | E | B | E | B | E | B | E | E | E | E | B | E | B | E | B | E | B | E | B | E | B | E | E | E | E | E | E | E | E | E | E | E | B | B | B | B | B | E | B | E | B | E | B | B | E | E | B | B | B | B | B | B | B | E | B |
| 121-179: |
E | E | B | E | B | E | E | B | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | B | E | B | E | B | B | B | B | B | B | B | B | B | E | E | B | E | E | E | E | E | E | E | E | B | B | B | B | B | B | B | E | B |
| 181-239: |
E | B | E | B | B | E | E | B | E | B | E | E | E | B | E | B | E | E | E | E | E | B | B | B | E | B | E | B | B | B | E | B | E | B | B | E | E | B | B | B | E | B | B | B | E | B | E | B | E | E | E | B | E | E | E | E | E | E | E | E |
| 241-252: |
B | B | E | B | B | B | B | B | B | B | E | E |
| |
| | e(Exposed): 115(45.63%) | b(Buried): 137(54.37%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 241-252: |
N | N | N | N | N | N | N | N | N | N | N | N |
| |
| | N(Normal): 251(99.6%) | T(Disorder): 1(0.4%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.96 |
94.90 |
| TopL/2 |
0.90 |
94.05 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.21 |
| TopL |
77.38 |
| Top2L |
42.26 |
| Alignment |
Number |
| N |
10178 |
| Neff |
3717 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.8578 |
| Model 3 |
0.7609 |
| Model 4 |
0.9512 |
| Model 5 |
0.7587 |
| Average |
0.83215 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4rl8 |
0.64884 |
| 1tly |
0.64319 |
| 3kvn |
0.64228 |
| 5o68 |
0.64021 |
| 1uyn |
0.63978 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
77.38 |
| Top2L |
42.46 |
| Alignment |
Number |
| N |
10178 |
| Neff |
3717 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8578 |
| Model 3 |
0.7674 |
| Model 4 |
0.8664 |
| Model 5 |
0.7625 |
| Average |
0.81353 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1tly |
0.65660 |
| 1tlz |
0.65350 |
| 1tlw |
0.65259 |
| 3kvn |
0.64845 |
| 4rl8 |
0.64754 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.21 |
| TopL |
73.81 |
| Top2L |
37.10 |
| Alignment |
Number |
| N |
10178 |
| Neff |
3717 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7609 |
| Model 2 |
0.7674 |
| Model 4 |
0.7586 |
| Model 5 |
0.9351 |
| Average |
0.80550 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4rl8 |
0.67094 |
| 5o67 |
0.65604 |
| 5o68 |
0.65366 |
| 1uyn |
0.65328 |
| 4v3h |
0.64936 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.21 |
| TopL |
76.19 |
| Top2L |
41.27 |
| Alignment |
Number |
| N |
10178 |
| Neff |
3717 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9512 |
| Model 2 |
0.8664 |
| Model 3 |
0.7586 |
| Model 5 |
0.7548 |
| Average |
0.83275 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1tly |
0.65771 |
| 1tlz |
0.65458 |
| 1tlw |
0.65387 |
| 3kvn |
0.64432 |
| 4rl8 |
0.64309 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.41 |
| TopL |
74.21 |
| Top2L |
37.50 |
| Alignment |
Number |
| N |
10178 |
| Neff |
3717 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7587 |
| Model 2 |
0.7625 |
| Model 3 |
0.9351 |
| Model 4 |
0.7548 |
| Average |
0.80277 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4rl8 |
0.67473 |
| 5o67 |
0.66055 |
| 4v3g |
0.65509 |
| 5o68 |
0.65463 |
| 4v3h |
0.65310 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
