P76243
multicom
P76243
full_length
P76243
Results of Structure Prediction for Target Name: P76243 ( Click 
)
Domain Boundary prediction ( View )
>P76243: 1-115
| 1-60: |
M | N | I | Q | C | K | R | V | Y | D | P | A | E | Q | S | D | G | Y | R | I | L | V | D | R | L | W | P | R | G | I | K | K | T | D | L | A | L | D | E | W | D | K | E | I | T | P | S | T | E | L | R | K | A | F | H | G | E | V | V | D |
| 61-115: |
Y | A | T | F | R | E | Q | Y | L | A | E | L | A | Q | H | E | Q | E | G | K | R | L | A | D | I | A | K | K | Q | P | L | T | L | L | Y | S | A | K | N | T | T | Q | N | H | A | L | V | L | A | D | W | L | R | S | L |
| 1-60: |
C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | H | H | H | C | C | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | C | C | C | C | H | H |
| 61-115: |
H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E | E | E | C | C | C | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | C |
| |
| | H(Helix): 57(49.57%) | E(Strand): 19(16.52%) | C(Coil): 39(33.91%) |
| 1-60: |
E | E | B | E | B | E | B | B | B | E | E | E | E | E | E | E | B | B | B | B | B | B | B | B | B | B | B | E | E | B | E | E | E | E | B | E | B | E | E | B | B | E | E | B | B | E | E | E | E | B | B | E | B | B | E | E | E | E | E | E |
| 61-115: |
B | E | E | B | B | E | E | B | E | E | B | B | E | E | E | E | E | B | B | E | E | B | E | E | B | B | E | E | E | E | B | B | B | B | B | B | B | E | E | E | E | E | B | B | B | E | B | B | E | E | B | B | E | E | E |
| |
| | e(Exposed): 63(54.78%) | b(Buried): 52(45.22%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-115: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| |
| | N(Normal): 115(100%) | T(Disorder): 0(0%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.97 |
96.61 |
| TopL/2 |
0.89 |
93.15 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.55 |
| TopL |
88.70 |
| Top2L |
47.83 |
| Alignment |
Number |
| N |
3775 |
| Neff |
1447 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9881 |
| Model 3 |
0.9843 |
| Model 4 |
0.9846 |
| Model 5 |
0.9827 |
| Average |
0.98492 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2oz5 |
0.69533 |
| 1ywf |
0.66235 |
| 3d8h |
0.64021 |
| 1fzt |
0.63581 |
| 2h4z |
0.63427 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.55 |
| TopL |
87.83 |
| Top2L |
47.83 |
| Alignment |
Number |
| N |
3775 |
| Neff |
1447 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9881 |
| Model 3 |
0.9818 |
| Model 4 |
0.9779 |
| Model 5 |
0.9851 |
| Average |
0.98323 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1ywf |
0.66609 |
| 2oz5 |
0.64584 |
| 3fdz |
0.63530 |
| 2h52 |
0.63380 |
| 1fzt |
0.63376 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.55 |
| TopL |
87.83 |
| Top2L |
46.52 |
| Alignment |
Number |
| N |
3775 |
| Neff |
1447 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9843 |
| Model 2 |
0.9818 |
| Model 4 |
0.9945 |
| Model 5 |
0.9825 |
| Average |
0.98577 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1ywf |
0.66650 |
| 2oz5 |
0.65163 |
| 3d8h |
0.63274 |
| 1fzt |
0.63209 |
| 1bq3 |
0.62822 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
94.83 |
| TopL |
87.83 |
| Top2L |
47.83 |
| Alignment |
Number |
| N |
3775 |
| Neff |
1447 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9846 |
| Model 2 |
0.9779 |
| Model 3 |
0.9945 |
| Model 5 |
0.9780 |
| Average |
0.98375 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1ywf |
0.66180 |
| 2oz5 |
0.64857 |
| 3d8h |
0.63292 |
| 1fzt |
0.63129 |
| 5pgm |
0.62940 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.55 |
| TopL |
87.83 |
| Top2L |
48.26 |
| Alignment |
Number |
| N |
3775 |
| Neff |
1447 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9827 |
| Model 2 |
0.9851 |
| Model 3 |
0.9825 |
| Model 4 |
0.9780 |
| Average |
0.98208 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2oz5 |
0.69963 |
| 1ywf |
0.66619 |
| 1fzt |
0.63360 |
| 3d8h |
0.63193 |
| 3nfy |
0.63101 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
