P77692
multicom
P77692
full_length
P77692
Results of Structure Prediction for Target Name: P77692 ( Click 
)
Domain Boundary prediction ( View )
>P77692: 1-113
| 1-60: |
M | K | T | L | P | A | I | T | Q | R | A | V | K | P | C | L | S | P | V | A | V | W | Q | M | L | L | T | R | L | L | E | Q | H | Y | G | L | T | I | N | D | T | P | F | C | N | E | A | V | I | K | E | H | I | D | A | G | I | T | L | A |
| 61-113: |
D | A | V | N | F | L | V | E | K | Y | E | L | V | R | I | D | R | K | G | F | S | W | Q | E | Q | S | P | Y | L | R | A | A | D | I | L | R | A | R | Q | A | T | G | L | L | R | Q | S | R | N | N | V | V | R |
| 1-60: |
C | C | C | C | C | C | C | H | H | H | H | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | E | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | C | C | C | C | H | H |
| 61-113: |
H | H | H | H | H | H | H | H | H | H | H | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | H | H | H | C | C | C | C | C | E | C | C |
| |
| | H(Helix): 56(49.56%) | E(Strand): 5(4.42%) | C(Coil): 52(46.02%) |
| 1-60: |
E | E | E | B | E | E | E | B | E | E | E | B | E | E | B | E | B | B | B | B | B | B | B | B | B | B | B | E | B | B | E | E | B | B | B | B | B | B | E | E | B | E | B | B | E | E | E | B | B | E | E | B | B | E | E | E | B | E | B | B |
| 61-113: |
E | B | B | B | E | B | B | E | E | B | E | B | E | B | B | E | E | E | E | E | E | B | B | E | E | B | E | B | B | B | B | B | B | B | B | B | B | B | E | B | B | E | B | B | E | E | E | E | E | E | B | E | E |
| |
| | e(Exposed): 52(46.02%) | b(Buried): 61(53.98%) |
| 1-60: |
T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-113: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T |
| |
| | N(Normal): 94(83.19%) | T(Disorder): 19(16.81%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.50 |
51.02 |
| TopL/2 |
0.37 |
40.62 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
69.57 |
| TopL/2 |
61.40 |
| TopL |
40.71 |
| Top2L |
22.57 |
| Alignment |
Number |
| N |
1078 |
| Neff |
54 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.8963 |
| Model 3 |
0.8811 |
| Model 4 |
0.8658 |
| Model 5 |
0.8626 |
| Average |
0.87645 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5af7 |
0.58963 |
| 1ivh |
0.57889 |
| 2vig |
0.57590 |
| 1buc |
0.57348 |
| 3mpj |
0.57327 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
78.26 |
| TopL/2 |
64.91 |
| TopL |
43.36 |
| Top2L |
23.89 |
| Alignment |
Number |
| N |
1078 |
| Neff |
54 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8963 |
| Model 3 |
0.8372 |
| Model 4 |
0.9006 |
| Model 5 |
0.8781 |
| Average |
0.87805 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3mpj |
0.56158 |
| 2vig |
0.55984 |
| 3mpi |
0.55933 |
| 5dwy |
0.55703 |
| 4kto |
0.55697 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
73.91 |
| TopL/2 |
63.16 |
| TopL |
45.13 |
| Top2L |
26.11 |
| Alignment |
Number |
| N |
1078 |
| Neff |
54 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8811 |
| Model 2 |
0.8372 |
| Model 4 |
0.8633 |
| Model 5 |
0.8756 |
| Average |
0.86430 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2y35 |
0.55861 |
| 3fqd |
0.55369 |
| 3pm0 |
0.55017 |
| 4nkx |
0.54865 |
| 5fir |
0.54826 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
82.61 |
| TopL/2 |
63.16 |
| TopL |
44.25 |
| Top2L |
24.78 |
| Alignment |
Number |
| N |
1078 |
| Neff |
54 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8658 |
| Model 2 |
0.9006 |
| Model 3 |
0.8633 |
| Model 5 |
0.9218 |
| Average |
0.88787 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1buc |
0.58083 |
| 2vig |
0.57589 |
| 5lnx |
0.57494 |
| 5zw8 |
0.57396 |
| 5af7 |
0.57365 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
78.26 |
| TopL/2 |
66.67 |
| TopL |
42.48 |
| Top2L |
23.89 |
| Alignment |
Number |
| N |
1078 |
| Neff |
54 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8626 |
| Model 2 |
0.8781 |
| Model 3 |
0.8756 |
| Model 4 |
0.9218 |
| Average |
0.88453 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1buc |
0.57089 |
| 4l1f |
0.56441 |
| 3pif |
0.56362 |
| 5lnx |
0.56186 |
| 5af7 |
0.55961 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
