P96276
multicom
P96276
full_length
P96276
Results of Structure Prediction for Target Name: P96276 ( Click 
)
Domain Boundary prediction ( View )
>P96276: 1-102
| 1-60: |
M | D | S | A | M | A | R | A | I | R | S | G | D | D | A | E | V | A | D | G | L | T | R | R | E | H | D | I | L | A | F | E | R | Q | W | W | K | F | A | G | V | K | E | E | A | I | K | E | L | F | S | M | S | A | T | R | Y | Y | Q | V |
| 61-102: |
L | N | A | L | V | D | R | P | E | A | L | A | A | D | P | M | L | V | K | R | L | R | R | L | R | A | S | R | Q | K | A | R | A | A | R | R | L | G | F | E | V | T |
| 1-60: |
C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H |
| 61-102: |
H | H | H | H | H | C | C | H | H | H | H | H | H | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C |
|
| | H(Helix): 62(60.78%) | E(Strand): 0(0%) | C(Coil): 40(39.22%) |
| 1-60: |
E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | E | B | E | E | B | B | E | B | B | E | E | B | B | E | E | E | E | E | E | E | E | B | B | E | E | E | B | E | B | B | B | B | E | B | B | E | B |
| 61-102: |
B | B | E | B | B | E | E | E | E | B | B | E | E | E | B | B | B | B | E | B | B | E | E | B | B | E | E | E | E | E | E | E | B | B | E | E | B | E | B | E | E | E |
|
| | e(Exposed): 66(64.71%) | b(Buried): 36(35.29%) |
| 1-60: |
T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-102: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | N | T | T | T |
|
| | N(Normal): 78(76.47%) | T(Disorder): 24(23.53%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.85 |
84.78 |
| TopL/2 |
0.58 |
61.94 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.00 |
| TopL/2 |
62.75 |
| TopL |
33.33 |
| Top2L |
17.65 |
| Alignment |
Number |
| N |
2252 |
| Neff |
337 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9583 |
| Model 3 |
0.8905 |
| Model 4 |
0.9351 |
| Model 5 |
0.9204 |
| Average |
0.92607 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2xsa |
0.57733 |
| 5f8u |
0.57242 |
| 2ycz |
0.57230 |
| 6li0 |
0.57228 |
| 2vj5 |
0.57215 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.00 |
| TopL/2 |
64.71 |
| TopL |
35.29 |
| Top2L |
18.63 |
| Alignment |
Number |
| N |
2252 |
| Neff |
337 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9583 |
| Model 3 |
0.9156 |
| Model 4 |
0.9086 |
| Model 5 |
0.9086 |
| Average |
0.92277 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5a9f |
0.58436 |
| 4amj |
0.57878 |
| 2xsa |
0.57487 |
| 4bvn |
0.57081 |
| 6kuy |
0.56973 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.00 |
| TopL/2 |
62.75 |
| TopL |
33.33 |
| Top2L |
16.67 |
| Alignment |
Number |
| N |
2252 |
| Neff |
337 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8905 |
| Model 2 |
0.9156 |
| Model 4 |
0.8952 |
| Model 5 |
0.8860 |
| Average |
0.89682 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5aga |
0.58172 |
| 5a9f |
0.58081 |
| 5es2 |
0.57908 |
| 2xsa |
0.57610 |
| 5fl0 |
0.57000 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.00 |
| TopL/2 |
64.71 |
| TopL |
34.31 |
| Top2L |
18.14 |
| Alignment |
Number |
| N |
2252 |
| Neff |
337 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9351 |
| Model 2 |
0.9086 |
| Model 3 |
0.8952 |
| Model 5 |
0.9293 |
| Average |
0.91705 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5a8e |
0.58140 |
| 2xsa |
0.57992 |
| 5a9f |
0.57969 |
| 2vj5 |
0.57950 |
| 5es2 |
0.57902 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.00 |
| TopL/2 |
62.75 |
| TopL |
33.33 |
| Top2L |
17.65 |
| Alignment |
Number |
| N |
2252 |
| Neff |
337 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9204 |
| Model 2 |
0.9086 |
| Model 3 |
0.8860 |
| Model 4 |
0.9293 |
| Average |
0.91107 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5a9j |
0.60538 |
| 5aga |
0.60409 |
| 5a9f |
0.60035 |
| 2xsa |
0.58946 |
| 5es2 |
0.58665 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
