P96357
multicom
P96357
full_length
P96357
Results of Structure Prediction for Target Name: P96357 ( Click 
)
Domain Boundary prediction ( View )
>P96357: 1-207
| 1-60: |
M | C | A | K | P | Y | L | I | D | T | I | A | H | M | A | I | W | D | R | L | V | E | V | A | A | E | Q | H | G | Y | V | T | T | R | D | A | R | D | I | G | V | D | P | V | Q | L | R | L | L | A | G | R | G | R | L | E | R | V | G | R |
| 61-119: |
G | V | Y | R | V | P | V | L | P | R | G | E | H | D | D | L | A | A | A | V | S | W | T | L | G | R | G | V | I | S | H | E | S | A | L | A | L | H | A | L | A | D | V | N | P | S | R | I | H | L | T | V | P | R | N | N | H | P | R | A |
| 121-179: |
A | G | G | E | L | Y | R | V | H | R | R | D | L | Q | A | A | H | V | T | S | V | D | G | I | P | V | T | T | V | A | R | T | I | K | D | C | V | K | T | G | T | D | P | Y | Q | L | R | A | A | I | E | R | A | E | A | E | G | T | L | R |
| 181-207: |
R | G | S | A | A | E | L | R | A | A | L | D | E | T | T | A | G | L | R | A | R | P | K | R | A | S | A |
| 1-60: |
C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | C | C | C | E | E | E | E | E | C |
| 61-119: |
C | E | E | E | E | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | E | E | E | E | E | C | C | C | C | C | C | C | C |
| 121-179: |
C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | E | E | E | E | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C |
| 181-207: |
H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | H | C | C | C | H | H | H | H | C | C |
| |
| | H(Helix): 98(47.34%) | E(Strand): 29(14.01%) | C(Coil): 80(38.65%) |
| 1-60: |
E | B | B | B | E | B | B | B | E | B | B | E | E | B | E | E | B | E | E | B | B | E | B | B | E | E | B | E | B | B | B | B | B | E | B | B | E | E | B | E | B | E | E | E | B | B | E | E | B | B | E | E | E | E | B | E | B | B | B | B |
| 61-119: |
B | B | B | B | B | B | E | B | E | E | E | E | B | E | B | B | B | B | B | B | B | B | B | B | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | B | E | B | E | E | B | B | B | B | B | B | E | E | E | E | E | E | E |
| 121-179: |
E | E | E | E | B | B | B | B | B | B | B | E | B | E | E | E | E | B | E | E | B | E | E | B | E | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | B | E | E | E | B | B | B | E | B | B | E | E | B | B | E | E | E | B | B | E |
| 181-207: |
E | E | E | B | E | E | B | B | E | E | B | E | E | E | E | E | E | E | E | E | E | B | E | E | B | E | E |
| |
| | e(Exposed): 94(45.41%) | b(Buried): 113(54.59%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-207: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T |
| |
| | N(Normal): 197(95.17%) | T(Disorder): 10(4.83%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.91 |
90.69 |
| TopL/2 |
0.75 |
78.42 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
73.17 |
| TopL/2 |
63.46 |
| TopL |
46.38 |
| Top2L |
26.57 |
| Alignment |
Number |
| N |
17470 |
| Neff |
6463 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9325 |
| Model 3 |
0.9088 |
| Model 4 |
0.8702 |
| Model 5 |
0.6770 |
| Average |
0.84713 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1zel |
0.63049 |
| 5a2x |
0.49730 |
| 5a2y |
0.49728 |
| 5a2z |
0.49648 |
| 5a2v |
0.49608 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
75.61 |
| TopL/2 |
64.42 |
| TopL |
46.38 |
| Top2L |
26.57 |
| Alignment |
Number |
| N |
17470 |
| Neff |
6463 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9325 |
| Model 3 |
0.8663 |
| Model 4 |
0.8693 |
| Model 5 |
0.6767 |
| Average |
0.83620 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1zel |
0.64377 |
| 5a2y |
0.48890 |
| 5a2x |
0.48685 |
| 5a2w |
0.48600 |
| 5a2z |
0.48490 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
73.17 |
| TopL/2 |
61.54 |
| TopL |
44.44 |
| Top2L |
25.36 |
| Alignment |
Number |
| N |
17470 |
| Neff |
6463 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9088 |
| Model 2 |
0.8663 |
| Model 4 |
0.8761 |
| Model 5 |
0.7468 |
| Average |
0.84950 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1zel |
0.63734 |
| 5a2v |
0.50287 |
| 5a2y |
0.50273 |
| 5a2z |
0.50018 |
| 5a30 |
0.49856 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
85.37 |
| TopL/2 |
72.12 |
| TopL |
49.28 |
| Top2L |
28.26 |
| Alignment |
Number |
| N |
17470 |
| Neff |
6463 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8702 |
| Model 2 |
0.8693 |
| Model 3 |
0.8761 |
| Model 5 |
0.6837 |
| Average |
0.82483 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1zel |
0.65871 |
| 5a2y |
0.50272 |
| 5a2z |
0.50219 |
| 5a2x |
0.50186 |
| 5a2v |
0.50056 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
82.93 |
| TopL/2 |
75.00 |
| TopL |
53.14 |
| Top2L |
28.74 |
| Alignment |
Number |
| N |
17470 |
| Neff |
6463 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6770 |
| Model 2 |
0.6767 |
| Model 3 |
0.7468 |
| Model 4 |
0.6837 |
| Average |
0.69605 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1zel |
0.65239 |
| 6j7q |
0.49853 |
| 6j7r |
0.49383 |
| 6j7n |
0.49364 |
| 6j7s |
0.49284 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
