P9WKQ6
multicom
P9WKQ6
full_length
P9WKQ6
Results of Structure Prediction for Target Name: P9WKQ6 ( Click 
)
Domain Boundary prediction ( View )
>P9WKQ6: 1-253
| 1-60: |
M | R | E | L | K | V | V | G | L | D | A | D | G | K | N | I | I | C | Q | G | A | I | P | S | E | Q | F | K | L | P | V | D | D | R | L | R | A | A | L | R | D | D | S | V | Q | P | E | Q | A | Q | L | D | I | E | V | T | N | V | L | S |
| 61-119: |
P | K | E | I | Q | A | R | I | R | A | G | A | S | V | E | Q | V | A | A | A | S | G | S | D | I | A | R | I | R | R | F | A | H | P | V | L | L | E | R | S | R | A | A | E | L | A | T | A | A | H | P | V | L | A | D | G | P | A | V | L |
| 121-179: |
T | M | Q | E | T | V | A | A | A | L | V | A | R | G | L | N | P | D | S | L | T | W | D | A | W | R | N | E | D | S | R | W | T | V | Q | L | A | W | K | A | G | R | S | D | N | L | A | H | F | R | F | T | P | G | A | H | G | G | T | A |
| 181-239: |
T | A | I | D | D | T | A | H | E | L | I | N | P | T | F | N | R | P | L | R | P | L | A | P | V | A | H | L | D | F | D | E | P | E | P | A | Q | P | T | L | T | V | P | S | A | Q | P | V | S | N | R | R | G | K | P | A | I | P | A | W |
| 241-253: |
E | D | V | L | L | G | V | R | S | G | G | R | R |
| 1-60: |
C | C | C | E | E | E | E | E | E | C | C | C | C | C | E | E | E | E | E | C | C | C | C | C | C | E | E | E | E | E | C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 61-119: |
H | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | H |
| 121-179: |
H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | C | E | E | H | H | H | C | C | C | C | C | C | E | E | E | E | E | E | E | E | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | E | E |
| 181-239: |
C | C | C | C | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H |
| 241-253: |
H | H | H | E | E | E | E | C | C | C | C | C | C |
| |
| | H(Helix): 75(29.64%) | E(Strand): 38(15.02%) | C(Coil): 140(55.34%) |
| 1-60: |
E | E | E | B | E | B | B | B | B | E | E | E | B | E | B | B | B | B | B | B | E | E | E | E | E | E | B | B | B | E | B | B | E | E | B | B | E | B | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E |
| 61-119: |
B | E | E | B | B | E | B | B | E | B | E | E | E | B | E | E | B | B | E | E | B | E | B | E | E | E | B | B | E | E | B | E | B | B | B | E | E | B | B | E | B | B | B | E | B | B | E | E | B | E | B | E | E | E | E | E | E | E | E | E |
| 121-179: |
E | B | B | E | B | B | B | E | B | B | E | E | B | E | B | E | E | E | E | B | E | B | B | B | B | E | E | E | E | E | E | B | B | B | B | B | B | B | E | E | E | E | E | E | B | E | B | E | B | B | B | E | E | E | E | E | E | E | B | B |
| 181-239: |
B | B | B | B | E | B | B | E | E | B | B | E | E | E | E | E | E | E | B | E | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | E | B |
| 241-253: |
E | B | B | B | B | B | B | B | E | E | E | E | E |
| |
| | e(Exposed): 157(62.06%) | b(Buried): 96(37.94%) |
| 1-60: |
T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N |
| 241-253: |
N | N | N | N | N | N | N | N | T | T | T | T | T |
| |
| | N(Normal): 202(79.84%) | T(Disorder): 51(20.16%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.60 |
61.39 |
| TopL/2 |
0.42 |
44.85 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
76.47 |
| TopL/2 |
43.31 |
| TopL |
24.90 |
| Top2L |
15.02 |
| Alignment |
Number |
| N |
3927 |
| Neff |
256 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.7438 |
| Model 3 |
0.7209 |
| Model 4 |
0.8360 |
| Model 5 |
0.7749 |
| Average |
0.76890 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4kf7 |
0.42629 |
| 2qvw |
0.42475 |
| 2ebs |
0.41930 |
| 6bk8 |
0.41815 |
| 5gan |
0.41126 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
78.43 |
| TopL/2 |
47.24 |
| TopL |
28.46 |
| Top2L |
17.19 |
| Alignment |
Number |
| N |
3927 |
| Neff |
256 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7438 |
| Model 3 |
0.7536 |
| Model 4 |
0.7794 |
| Model 5 |
0.8155 |
| Average |
0.77308 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2ffl |
0.41406 |
| 2w76 |
0.40428 |
| 2w75 |
0.40357 |
| 1ggt |
0.40195 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
76.47 |
| TopL/2 |
48.03 |
| TopL |
28.46 |
| Top2L |
17.19 |
| Alignment |
Number |
| N |
3927 |
| Neff |
256 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7209 |
| Model 2 |
0.7536 |
| Model 4 |
0.7253 |
| Model 5 |
0.7617 |
| Average |
0.74038 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5w1e |
0.41378 |
| 2w76 |
0.41313 |
| 4yz4 |
0.41215 |
| 3sli |
0.41201 |
| 1e8f |
0.41043 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
74.51 |
| TopL/2 |
45.67 |
| TopL |
26.88 |
| Top2L |
16.21 |
| Alignment |
Number |
| N |
3927 |
| Neff |
256 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8360 |
| Model 2 |
0.7794 |
| Model 3 |
0.7253 |
| Model 5 |
0.7727 |
| Average |
0.77835 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6jxj |
0.41076 |
| 5gan |
0.41042 |
| 6ahd |
0.40966 |
| 1ksu |
0.40796 |
| 1f13 |
0.40746 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
76.47 |
| TopL/2 |
44.88 |
| TopL |
27.27 |
| Top2L |
16.21 |
| Alignment |
Number |
| N |
3927 |
| Neff |
256 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7749 |
| Model 2 |
0.8155 |
| Model 3 |
0.7617 |
| Model 4 |
0.7727 |
| Average |
0.78120 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1ggt |
0.42694 |
| 5ylz |
0.42669 |
| 1fie |
0.42565 |
| 6exn |
0.42531 |
| 6bk8 |
0.42240 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
