P9WL17
multicom
P9WL17
full_length
P9WL17
Results of Structure Prediction for Target Name: P9WL17 ( Click 
)
Domain Boundary prediction ( View )
>P9WL17: 1-207
| 1-60: |
M | D | L | G | G | V | R | R | R | I | S | L | M | A | R | Q | H | G | P | T | A | Q | R | H | V | A | S | P | M | T | V | D | I | A | R | L | G | R | R | P | G | A | M | F | E | L | H | D | T | V | H | S | P | A | R | I | G | L | E | L |
| 61-119: |
I | A | I | D | Q | G | A | L | L | D | L | D | L | R | V | E | S | V | S | E | G | V | L | V | T | G | T | V | A | A | P | T | V | G | E | C | A | R | C | L | S | P | V | R | G | R | V | Q | V | A | L | T | E | L | F | A | Y | P | D | S |
| 121-179: |
A | T | D | E | T | T | E | E | D | E | V | G | R | V | V | D | E | T | I | D | L | E | Q | P | I | I | D | A | V | G | L | E | L | P | F | S | P | V | C | R | P | D | C | P | G | L | C | P | Q | C | G | V | P | L | A | S | E | P | G | H |
| 181-207: |
R | H | E | Q | I | D | P | R | W | A | K | L | V | E | M | L | G | P | E | S | D | T | L | R | G | E | R |
| 1-60: |
C | C | C | C | C | C | C | C | C | C | E | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | H | H | H | H | H | C | C | C | C | C | C | E | E | E | E | E | E | E | C | C | C | H | H | C | C | C | C | C |
| 61-119: |
C | E | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | C | C | C | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | C | H | H | H | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | E | C | C | C | C |
| 121-179: |
C | C | C | C | C | C | C | C | C | C | E | E | E | E | C | C | C | C | E | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 181-207: |
C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C |
| |
| | H(Helix): 36(17.39%) | E(Strand): 52(25.12%) | C(Coil): 119(57.49%) |
| 1-60: |
E | E | E | E | E | B | E | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E | B | B | B | E | E | B | E | E | E | E | E | E | E | E | E | B | E | B | E | B | E | B | E | E | E | B | E | E | E | B |
| 61-119: |
B | E | B | E | E | E | E | E | B | E | B | E | B | E | B | E | E | E | E | E | E | B | B | B | E | B | E | B | E | B | E | B | E | B | E | B | B | E | B | B | E | E | B | E | E | E | B | E | B | E | B | E | E | B | B | E | E | E | E | E |
| 121-179: |
E | E | E | E | E | E | E | E | E | E | B | B | B | B | E | E | E | E | B | E | B | E | E | B | B | B | E | B | B | B | B | B | B | E | B | E | B | B | B | E | E | E | B | E | E | B | B | E | E | B | E | E | E | B | E | E | E | E | B | E |
| 181-207: |
E | E | E | E | B | B | E | B | B | E | E | B | E | E | B | B | E | E | E | E | E | E | E | E | E | E | E |
| |
| | e(Exposed): 131(63.29%) | b(Buried): 76(36.71%) |
| 1-60: |
T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | N | N |
| 181-207: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T |
| |
| | N(Normal): 171(82.61%) | T(Disorder): 36(17.39%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.94 |
93.44 |
| TopL/2 |
0.83 |
86.84 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.12 |
| TopL/2 |
92.31 |
| TopL |
67.63 |
| Top2L |
37.92 |
| Alignment |
Number |
| N |
6824 |
| Neff |
2623 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.8830 |
| Model 3 |
0.8977 |
| Model 4 |
0.8722 |
| Model 5 |
0.8990 |
| Average |
0.88797 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5d0o |
0.50326 |
| 5ayw |
0.50167 |
| 4n75 |
0.50099 |
| 5or1 |
0.49517 |
| 4c4v |
0.49238 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
97.56 |
| TopL/2 |
91.35 |
| TopL |
66.67 |
| Top2L |
36.96 |
| Alignment |
Number |
| N |
6824 |
| Neff |
2623 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8830 |
| Model 3 |
0.8897 |
| Model 4 |
0.8680 |
| Model 5 |
0.8987 |
| Average |
0.88485 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4n75 |
0.51862 |
| 5or1 |
0.51569 |
| 6t1w |
0.50925 |
| 4c4v |
0.50644 |
| 5ayw |
0.50471 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
97.56 |
| TopL/2 |
91.35 |
| TopL |
66.18 |
| Top2L |
37.68 |
| Alignment |
Number |
| N |
6824 |
| Neff |
2623 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8977 |
| Model 2 |
0.8897 |
| Model 4 |
0.8676 |
| Model 5 |
0.8859 |
| Average |
0.88523 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6t1w |
0.50217 |
| 5d0o |
0.50160 |
| 4n75 |
0.49849 |
| 5ayw |
0.49833 |
| 5or1 |
0.49444 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
97.56 |
| TopL/2 |
94.23 |
| TopL |
67.63 |
| Top2L |
40.10 |
| Alignment |
Number |
| N |
6824 |
| Neff |
2623 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8722 |
| Model 2 |
0.8680 |
| Model 3 |
0.8676 |
| Model 5 |
0.8795 |
| Average |
0.87183 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5d0o |
0.51594 |
| 4n75 |
0.51451 |
| 5ayw |
0.51429 |
| 5or1 |
0.51292 |
| 4c4v |
0.51122 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
97.56 |
| TopL/2 |
92.31 |
| TopL |
67.15 |
| Top2L |
39.13 |
| Alignment |
Number |
| N |
6824 |
| Neff |
2623 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8990 |
| Model 2 |
0.8987 |
| Model 3 |
0.8859 |
| Model 4 |
0.8795 |
| Average |
0.89078 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6t1w |
0.52055 |
| 5d0o |
0.51881 |
| 5ayw |
0.51757 |
| 4n75 |
0.51748 |
| 5or1 |
0.51276 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
