P9WLX4
multicom
P9WLX4
full_length
P9WLX4
Results of Structure Prediction for Target Name: P9WLX4 ( Click 
)
Domain Boundary prediction ( View )
>P9WLX4: 1-317
| 1-60: |
M | T | E | S | K | A | P | A | V | V | H | P | P | S | M | L | R | G | D | I | D | D | P | K | L | A | A | A | L | R | T | L | E | L | T | V | K | Q | K | L | D | G | V | L | H | G | D | H | L | G | L | I | P | G | P | G | S | E | P | G |
| 61-119: |
E | S | R | L | Y | Q | P | G | D | D | V | R | R | M | D | W | A | V | T | A | R | T | T | H | P | H | V | R | Q | M | I | A | D | R | E | L | E | T | W | L | V | V | D | M | S | A | S | L | D | F | G | T | A | C | C | E | K | R | D | L |
| 121-179: |
A | V | A | A | A | A | A | I | T | F | L | N | S | G | G | G | N | R | L | G | A | L | I | A | N | G | A | A | M | T | R | V | P | A | R | T | G | R | Q | H | Q | H | T | M | L | R | T | I | A | T | M | P | Q | A | P | A | G | V | R | G |
| 181-239: |
D | L | A | V | A | I | D | A | L | R | R | P | E | R | R | R | G | M | A | V | I | I | S | D | F | L | G | P | I | N | W | M | R | P | L | R | A | I | A | A | R | H | E | V | L | A | I | E | V | L | D | P | R | D | V | E | L | P | D | V |
| 241-299: |
G | D | V | V | L | Q | D | A | E | S | G | V | V | R | E | F | S | I | D | P | A | L | R | D | D | F | A | R | A | A | A | A | H | R | A | D | V | A | R | T | I | R | G | C | G | A | P | L | L | S | L | R | T | D | R | D | W | L | A | D |
| 301-317: |
I | V | R | F | V | A | S | R | R | R | G | A | L | A | G | H | Q |
| 1-60: |
C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | C | H | H | H | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H |
| 61-119: |
H | H | H | C | C | C | C | C | C | C | C | C | E | E | C | H | E | E | E | H | C | C | C | C | C | E | E | E | E | E | H | H | H | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H |
| 121-179: |
H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C |
| 181-239: |
C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | E | E | E | E | E | E | E | C | C | H | H | H | C | C | C | C | C |
| 241-299: |
C | C | E | E | E | E | C | C | C | C | C | C | E | E | E | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E | C | C | C | C | C | H | H | H | H |
| 301-317: |
H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C |
|
| | H(Helix): 129(40.69%) | E(Strand): 47(14.83%) | C(Coil): 141(44.48%) |
| 1-60: |
E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | E | E | E | B | E | E | E | E | B | B | E | B | B | E | E | B | E | B | B | B | E | E | E | B | E | E | B | B | E | B | E | B | E | B | E | E | E | B | E | E | B | E | B | E |
| 61-119: |
E | B | B | E | B | E | E | E | E | E | B | B | E | B | B | B | E | B | B | B | E | E | E | E | B | B | B | E | B | B | E | E | E | E | E | B | B | B | B | B | B | B | B | B | B | E | B | B | E | B | E | E | E | E | B | E | E | B | E | B |
| 121-179: |
B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | B | B | B | B | B | B | B | B | B | E | E | E | B | E | E | B | E | B | E | E | E | E | E | B | B | B | B | B | B | E | B | B | B | E | B | E | E | E | E | E | E | E | E | E |
| 181-239: |
E | B | E | E | B | B | E | B | B | B | E | E | B | E | E | E | B | B | B | B | B | B | B | B | B | B | E | E | E | E | B | B | E | B | B | E | E | B | B | E | E | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | B | E | E | E |
| 241-299: |
E | E | B | E | B | E | B | B | E | E | E | E | E | B | E | B | E | B | E | E | E | B | B | E | E | B | B | E | B | B | E | E | B | B | E | E | B | E | E | B | B | E | E | B | E | B | E | B | B | E | B | E | B | E | E | E | B | B | E | B |
| 301-317: |
B | B | E | B | B | E | E | E | E | E | E | E | E | E | E | E | E |
|
| | e(Exposed): 165(52.05%) | b(Buried): 152(47.95%) |
| 1-60: |
T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 241-299: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 301-317: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T |
|
| | N(Normal): 297(93.69%) | T(Disorder): 20(6.31%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.97 |
96.19 |
| TopL/2 |
0.89 |
92.56 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
98.41 |
| TopL/2 |
94.97 |
| TopL |
78.86 |
| Top2L |
48.90 |
| Alignment |
Number |
| N |
23086 |
| Neff |
3491 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.7286 |
| Model 3 |
0.6636 |
| Model 4 |
0.6772 |
| Model 5 |
0.6445 |
| Average |
0.67847 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6orb |
0.56569 |
| 5es4 |
0.51357 |
| 1pd0 |
0.50825 |
| 6qt8 |
0.50807 |
| 1pcx |
0.50777 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
96.83 |
| TopL/2 |
94.97 |
| TopL |
79.50 |
| Top2L |
49.05 |
| Alignment |
Number |
| N |
23086 |
| Neff |
3491 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7286 |
| Model 3 |
0.7487 |
| Model 4 |
0.6989 |
| Model 5 |
0.6708 |
| Average |
0.71175 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5es4 |
0.52483 |
| 3k6s |
0.52296 |
| 6orb |
0.50874 |
| 6qta |
0.50515 |
| 3txa |
0.50365 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
96.83 |
| TopL/2 |
95.60 |
| TopL |
81.07 |
| Top2L |
50.47 |
| Alignment |
Number |
| N |
23086 |
| Neff |
3491 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6636 |
| Model 2 |
0.7487 |
| Model 4 |
0.6875 |
| Model 5 |
0.6698 |
| Average |
0.69240 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1pd1 |
0.51352 |
| 1pd0 |
0.51274 |
| 2nup |
0.51203 |
| 5vnn |
0.51186 |
| 1pcx |
0.51142 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
98.41 |
| TopL/2 |
94.34 |
| TopL |
77.60 |
| Top2L |
49.21 |
| Alignment |
Number |
| N |
23086 |
| Neff |
3491 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6772 |
| Model 2 |
0.6989 |
| Model 3 |
0.6875 |
| Model 5 |
0.6515 |
| Average |
0.67878 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5es4 |
0.53255 |
| 3k6s |
0.52907 |
| 6orb |
0.51406 |
| 6qt8 |
0.50725 |
| 1pd1 |
0.50687 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
98.41 |
| TopL/2 |
95.60 |
| TopL |
79.18 |
| Top2L |
49.21 |
| Alignment |
Number |
| N |
23086 |
| Neff |
3491 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6445 |
| Model 2 |
0.6708 |
| Model 3 |
0.6698 |
| Model 4 |
0.6515 |
| Average |
0.65915 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4nen |
0.52916 |
| 4neh |
0.52240 |
| 6orb |
0.52098 |
| 1pd1 |
0.51997 |
| 1pcx |
0.51923 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
