Protein sequence

>P9WLX4: 1-317

1-60:

M

T

E

S

K

A

P

A

V

H

P

S

M

L

R

G

D

I

D

P

K

L

A

L

R

T

L

E

L

T

V

K

Q

K

L

D

G

V

L

H

G

D

H

L

G

L

I

P

G

P

G

S

E

P

G

61-119:

E

S

R

L

Y

Q

P

G

D

V

R

M

D

W

A

V

T

A

R

T

H

P

H

V

R

Q

M

I

A

D

R

E

L

E

T

W

L

V

D

M

S

A

S

L

D

F

G

T

A

C

E

K

R

D

L

121-179:

A

V

A

I

T

F

L

N

S

G

N

R

L

G

A

L

I

A

N

G

A

M

T

R

V

P

A

R

T

G

R

Q

H

Q

H

T

M

L

R

T

I

A

T

M

P

Q

A

P

A

G

V

R

G

181-239:

D

L

A

V

A

I

D

A

L

R

P

E

R

G

M

A

V

I

S

D

F

L

G

P

I

N

W

M

R

P

L

R

A

I

A

R

H

E

V

L

A

I

E

V

L

D

P

R

D

V

E

L

P

D

V

241-299:

G

D

V

L

Q

D

A

E

S

G

V

R

E

F

S

I

D

P

A

L

R

D

F

A

R

A

H

R

A

D

V

A

R

T

I

R

G

C

G

A

P

L

S

L

R

T

D

R

D

W

L

A

D

301-317:

I

V

R

F

V

A

S

R

G

A

L

A

G

H

Q

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

H

C

H

61-119:

H

C

E

C

H

E

H

C

E

H

C

E

C

H

121-179:

H

C

E

C

H

C

181-239:

C

H

C

E

C

H

C

E

C

H

C

241-299:

C

E

C

E

C

H

C

E

C

H

301-317:

H

C

H(Helix): 129(40.69%)

E(Strand): 47(14.83%)

C(Coil): 141(44.48%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-239:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

241-299:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

301-317:

B

E

B

E

e(Exposed): 165(52.05%)

b(Buried): 152(47.95%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

181-239:

N

241-299:

N

301-317:

N

T

N(Normal): 297(93.69%)

T(Disorder): 20(6.31%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.97	96.19
TopL/2	0.89	92.56

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-P9WLX4/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-P9WLX4/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-P9WLX4/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-P9WLX4/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	98.41
TopL/2	94.97
TopL	78.86
Top2L	48.90

( Alignment file )

Alignment	Number
N	23086
Neff	3491

Model comparsion

Model	TM-score
Model 2	0.7286
Model 3	0.6636
Model 4	0.6772
Model 5	0.6445
Average	0.67847

Radius Gyration

RG	RG/(2.0*L^0.4)
26.02	1.30138

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6orb	0.56569
5es4	0.51357
1pd0	0.50825
6qt8	0.50807
1pcx	0.50777

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__15478742117982058__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__15478742117982058__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P9WLX4","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__15478742117982058__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"15478742117982058","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P9WLX4"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__15478742117982058__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__15478742117982058__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P9WLX4","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__15478742117982058__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"15478742117982058","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=P9WLX4"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__15478742117982058__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-P9WLX4/full_length/P9WLX4.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-P9WLX4/full_length/P9WLX4.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

Time for openFile(work/multicom-P9WLX4/full_length/P9WLX4.casp2.pdb): 582 ms

reading 2979 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

2979 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__15478742117982058__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-P9WLX4/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-P9WLX4/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-P9WLX4/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-P9WLX4/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	96.83
TopL/2	94.97
TopL	79.50
Top2L	49.05

( Alignment file )

Alignment	Number
N	23086
Neff	3491

Model comparsion

Model	TM-score
Model 1	0.7286
Model 3	0.7487
Model 4	0.6989
Model 5	0.6708
Average	0.71175

Radius Gyration

RG	RG/(2.0*L^0.4)
27.97	1.39890

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5es4	0.52483
3k6s	0.52296
6orb	0.50874
6qta	0.50515
3txa	0.50365

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-P9WLX4/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-P9WLX4/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-P9WLX4/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-P9WLX4/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	96.83
TopL/2	95.60
TopL	81.07
Top2L	50.47

( Alignment file )

Alignment	Number
N	23086
Neff	3491

Model comparsion

Model	TM-score
Model 1	0.6636
Model 2	0.7487
Model 4	0.6875
Model 5	0.6698
Average	0.69240

Radius Gyration

RG	RG/(2.0*L^0.4)
28.22	1.41141

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1pd1	0.51352
1pd0	0.51274
2nup	0.51203
5vnn	0.51186
1pcx	0.51142

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

spinFPS is set too fast (30) -- can't keep up!

Model 4 vs Contact (Top L/5)

./work/multicom-P9WLX4/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-P9WLX4/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-P9WLX4/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-P9WLX4/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	98.41
TopL/2	94.34
TopL	77.60
Top2L	49.21

( Alignment file )

Alignment	Number
N	23086
Neff	3491

Model comparsion

Model	TM-score
Model 1	0.6772
Model 2	0.6989
Model 3	0.6875
Model 5	0.6515
Average	0.67878

Radius Gyration

RG	RG/(2.0*L^0.4)
28.81	1.44092

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5es4	0.53255
3k6s	0.52907
6orb	0.51406
6qt8	0.50725
1pd1	0.50687

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-P9WLX4/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-P9WLX4/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-P9WLX4/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-P9WLX4/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	98.41
TopL/2	95.60
TopL	79.18
Top2L	49.21

( Alignment file )

Alignment	Number
N	23086
Neff	3491

Model comparsion

Model	TM-score
Model 1	0.6445
Model 2	0.6708
Model 3	0.6698
Model 4	0.6515
Average	0.65915

Radius Gyration

RG	RG/(2.0*L^0.4)
25.84	1.29237

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4nen	0.52916
4neh	0.52240
6orb	0.52098
1pd1	0.51997
1pcx	0.51923

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )