Protein sequence

>Q57273: 1-292

1-60:

M

A

I

Q

M

T

K

T

Y

Q

W

P

Q

S

K

D

I

Y

P

Y

R

P

G

R

F

D

A

P

K

H

W

R

Y

N

L

R

S

F

L

N

R

G

S

I

R

F

E

Q

F

I

N

Q

H

P

F

L

I

61-119:

D

I

F

N

T

H

L

D

Y

S

Y

P

V

A

C

R

F

L

D

K

R

F

N

A

S

Q

R

F

H

A

V

C

E

N

L

F

L

P

E

K

L

T

A

L

S

T

P

L

W

E

K

P

L

S

F

G

E

V

I

121-179:

P

D

F

E

M

T

L

S

M

T

H

Q

P

M

E

G

Y

W

V

L

E

L

W

H

K

P

R

N

E

L

V

Y

L

T

F

A

K

L

G

D

A

L

I

A

V

Q

G

P

N

F

E

G

S

K

E

M

181-239:

V

K

Q

L

T

K

L

C

H

G

L

R

P

A

Y

L

M

V

E

T

M

K

S

L

T

K

I

L

G

Y

N

K

L

G

I

P

Q

K

Y

Q

N

K

S

R

F

I

Q

S

K

Q

Y

T

V

D

Y

D

A

I

F

241-292:

G

E

S

G

E

L

K

D

Y

W

E

L

P

L

E

M

D

R

N

L

D

I

P

S

K

R

S

M

Y

R

K

R

Y

A

M

L

D

L

A

K

V

I

E

K

L

G

L

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

C

E

C

H

C

H

C

H

61-119:

H

C

H

C

H

C

H

C

H

C

121-179:

C

E

C

E

C

E

C

E

C

H

181-239:

H

C

H

C

E

C

E

H

C

E

C

H

241-292:

H

C

E

C

H

C

H

C

H(Helix): 141(48.29%)

E(Strand): 46(15.75%)

C(Coil): 105(35.96%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-292:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 126(43.15%)

b(Buried): 166(56.85%)

Disorder prediction (N: Normal T: Disorder)

1-60:

N

61-119:

N

121-179:

N

181-239:

N

241-292:

N

N(Normal): 292(100%)

T(Disorder): 0(0%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.89	88.88
TopL/2	0.73	76.40

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__368030410306468__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__368030410306468__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q57273","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__368030410306468__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"368030410306468","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q57273"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__368030410306468__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-Q57273/full_length/Q57273.casp1.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-Q57273/full_length/Q57273.casp1.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

Time for openFile(work/multicom-Q57273/full_length/Q57273.casp1.pdb): 681 ms

reading 2975 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

2975 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

loadClass J.g3d.HermiteRenderer

Model 1 vs Contact (Top L/5)

./work/multicom-Q57273/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-Q57273/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-Q57273/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-Q57273/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	98.28
TopL/2	89.73
TopL	54.79
Top2L	29.79

( Alignment file )

Alignment	Number
N	2952
Neff	551

Model comparsion

Model	TM-score
Model 2	0.8051
Model 3	0.8005
Model 4	0.9517
Model 5	0.8057
Average	0.84075

Radius Gyration

RG	RG/(2.0*L^0.4)
22.35	1.15529

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2eud	0.45945
2cvx	0.45823
2cvu	0.45819
2cvv	0.45817
2wgh	0.45688

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-Q57273/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-Q57273/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-Q57273/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-Q57273/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	95.21
TopL	69.18
Top2L	41.78

( Alignment file )

Alignment	Number
N	2952
Neff	551

Model comparsion

Model	TM-score
Model 1	0.8051
Model 3	0.9724
Model 4	0.8226
Model 5	0.9706
Average	0.89268

Radius Gyration

RG	RG/(2.0*L^0.4)
19.81	1.02399

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3s8b	0.46238
3rsr	0.45488
2cvv	0.45404
5l44	0.45361
5l43	0.45294

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

spinFPS is set too fast (30) -- can't keep up!

Model 3 vs Contact (Top L/5)

./work/multicom-Q57273/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-Q57273/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-Q57273/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-Q57273/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	93.15
TopL	67.47
Top2L	41.10

( Alignment file )

Alignment	Number
N	2952
Neff	551

Model comparsion

Model	TM-score
Model 1	0.8005
Model 2	0.9724
Model 4	0.8197
Model 5	0.9755
Average	0.89203

Radius Gyration

RG	RG/(2.0*L^0.4)
19.79	1.02296

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2eud	0.46878
3hnd	0.46636
3k8t	0.46514
3s8b	0.46455
2cvv	0.46441

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-Q57273/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-Q57273/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-Q57273/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-Q57273/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	90.41
TopL	55.48
Top2L	29.79

( Alignment file )

Alignment	Number
N	2952
Neff	551

Model comparsion

Model	TM-score
Model 1	0.9517
Model 2	0.8226
Model 3	0.8197
Model 5	0.8238
Average	0.85445

Radius Gyration

RG	RG/(2.0*L^0.4)
22.19	1.14702

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2zlf	0.45594
1zyz	0.45472
2cvx	0.45455
3s8c	0.45406
3s87	0.45399

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-Q57273/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-Q57273/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-Q57273/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-Q57273/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	93.15
TopL	66.10
Top2L	39.73

( Alignment file )

Alignment	Number
N	2952
Neff	551

Model comparsion

Model	TM-score
Model 1	0.8057
Model 2	0.9706
Model 3	0.9755
Model 4	0.8238
Average	0.89390

Radius Gyration

RG	RG/(2.0*L^0.4)
19.79	1.02296

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5d1y	0.46366
2cvu	0.46346
3k8t	0.46289
2eud	0.46219
3s8b	0.46131

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )