Protein sequence

>Q6F8C5: 1-172

1-60:

M

L

A

F

N

L

R

S

A

H

M

L

N

P

A

L

Q

V

L

A

K

D

G

S

I

A

D

N

T

Y

Q

P

I

A

E

D

G

V

I

P

A

G

D

V

M

T

A

Q

L

D

Q

L

T

A

I

Q

G

61-119:

K

A

L

Y

I

T

V

N

D

S

P

E

T

H

Q

F

P

L

D

Q

L

D

A

I

F

I

E

F

A

G

F

N

D

G

R

G

Y

S

F

A

L

R

Q

G

Y

Q

G

E

L

R

A

V

G

D

I

F

121-172:

K

D

V

L

N

Y

L

K

R

S

G

F

D

T

F

V

I

K

E

G

K

D

I

Q

E

A

G

L

N

D

F

R

Q

P

Y

Q

A

S

T

A

V

P

Q

A

D

Y

Q

T

G

A

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

E

C

E

C

E

H

C

61-119:

C

E

C

H

C

E

C

H

C

E

C

H

121-172:

H

C

E

C

H

C

H

E

C

H

C

H(Helix): 62(36.05%)

E(Strand): 29(16.86%)

C(Coil): 81(47.09%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

121-172:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 75(43.6%)

b(Buried): 97(56.4%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-172:

N

T

N(Normal): 155(90.12%)

T(Disorder): 17(9.88%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.92	91.08
TopL/2	0.78	81.46

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-Q6F8C5/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-Q6F8C5/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-Q6F8C5/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-Q6F8C5/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	94.19
TopL	66.28
Top2L	34.59

( Alignment file )

Alignment	Number
N	1258
Neff	390

Model comparsion

Model	TM-score
Model 2	0.9233
Model 3	0.9457
Model 4	0.9120
Model 5	0.9308
Average	0.92795

Radius Gyration

RG	RG/(2.0*L^0.4)
16.89	1.07994

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5zf4	0.70569
3zws	0.70501
4jtu	0.70473
5zf7	0.70465
6fmd	0.70460

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-Q6F8C5/full_length/Q6F8C5.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

JSmol exec jsmolApplet_M23d3 start applet null

Jmol JavaScript applet jsmolApplet_M23d3__2551617615430879__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d3__2551617615430879__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d3","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d3__2551617615430879__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2551617615430879","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d3 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d3__2551617615430879__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-Q6F8C5/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-Q6F8C5/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-Q6F8C5/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-Q6F8C5/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	95.35
TopL	65.70
Top2L	34.88

( Alignment file )

Alignment	Number
N	1258
Neff	390

Model comparsion

Model	TM-score
Model 1	0.9233
Model 3	0.9188
Model 4	0.9030
Model 5	0.9188
Average	0.91597

Radius Gyration

RG	RG/(2.0*L^0.4)
16.84	1.07675

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2prl	0.72438
2fpt	0.72419
1d3g	0.72389
5hqe	0.72326
5zf4	0.72322

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp3.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-Q6F8C5/full_length/Q6F8C5.casp3.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp3.pdb): 216 ms

reading 1328 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1328 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

loadClass J.thread.SpinThread

JSmol exec jsmolApplet_M23d4 start applet null

Jmol JavaScript applet jsmolApplet_M23d4__2551617615430879__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d4__2551617615430879__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d4","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d4__2551617615430879__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d4_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2551617615430879","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d4 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d4__2551617615430879__ ready

Model 3 vs Contact (Top L/5)

./work/multicom-Q6F8C5/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-Q6F8C5/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-Q6F8C5/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-Q6F8C5/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	94.19
TopL	66.28
Top2L	36.05

( Alignment file )

Alignment	Number
N	1258
Neff	390

Model comparsion

Model	TM-score
Model 1	0.9457
Model 2	0.9188
Model 4	0.9022
Model 5	0.9470
Average	0.92843

Radius Gyration

RG	RG/(2.0*L^0.4)
17.20	1.09977

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5k9d	0.70470
2prl	0.70426
5hin	0.70407
5zf4	0.70386
3zws	0.70384

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp4.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-Q6F8C5/full_length/Q6F8C5.casp4.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp4.pdb): 246 ms

reading 1328 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1328 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

JSmol exec jsmolApplet_M23d5 start applet null

Jmol JavaScript applet jsmolApplet_M23d5__2551617615430879__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d5__2551617615430879__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d5","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d5__2551617615430879__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d5_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2551617615430879","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d5 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d5__2551617615430879__ ready

Model 4 vs Contact (Top L/5)

./work/multicom-Q6F8C5/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-Q6F8C5/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-Q6F8C5/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-Q6F8C5/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	93.02
TopL	63.37
Top2L	33.14

( Alignment file )

Alignment	Number
N	1258
Neff	390

Model comparsion

Model	TM-score
Model 1	0.9120
Model 2	0.9030
Model 3	0.9022
Model 5	0.9191
Average	0.90908

Radius Gyration

RG	RG/(2.0*L^0.4)
16.71	1.06843

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5k9d	0.69992
5hqe	0.69953
6j3c	0.69931
5hin	0.69919
5zf4	0.69897

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__2551617615430879__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__2551617615430879__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__2551617615430879__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2551617615430879","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__2551617615430879__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__2551617615430879__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__2551617615430879__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2551617615430879","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6F8C5"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__2551617615430879__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp5.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-Q6F8C5/full_length/Q6F8C5.casp5.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp5.pdb): 198 ms

reading 1328 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1328 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

Script completed

Jmol script terminated

Time for openFile(work/multicom-Q6F8C5/full_length/Q6F8C5.casp2.pdb): 1552 ms

reading 1328 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1328 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__2551617615430879__ ready

Model 5 vs Contact (Top L/5)

./work/multicom-Q6F8C5/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-Q6F8C5/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-Q6F8C5/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-Q6F8C5/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.51
TopL	69.19
Top2L	36.34

( Alignment file )

Alignment	Number
N	1258
Neff	390

Model comparsion

Model	TM-score
Model 1	0.9308
Model 2	0.9188
Model 3	0.9470
Model 4	0.9191
Average	0.92893

Radius Gyration

RG	RG/(2.0*L^0.4)
16.91	1.08122

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5k9d	0.70716
5zf4	0.70678
5hqe	0.70675
5hin	0.70659
6idj	0.70633

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )