Q6FAJ7
multicom
Q6FAJ7
full_length
Q6FAJ7
Results of Structure Prediction for Target Name: Q6FAJ7 ( Click 
)
Domain Boundary prediction ( View )
>Q6FAJ7: 1-120
| 1-60: |
M | S | S | L | W | L | A | G | H | G | I | T | Q | A | E | A | T | I | D | Y | P | R | P | D | R | L | V | N | G | N | P | K | R | T | T | H | D | L | Y | Q | H | P | H | M | N | C | G | I | W | E | C | E | I | G | M | W | E | I | H | F |
| 61-119: |
A | P | N | K | Q | E | F | F | Q | I | I | E | G | K | V | R | I | H | D | A | N | T | N | T | Y | I | E | V | L | A | G | E | A | G | V | I | P | P | D | F | K | G | R | F | E | V | V | E | T | V | K | K | Y | F | V | I | V | E | S | T |
| 1-60: |
C | C | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | C | C | C | C | C | E | E | E | E | E | C | C | C | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | E | E | E | E | E |
| 61-119: |
C | C | C | C | C | E | E | E | E | E | E | E | C | E | E | E | E | E | C | C | C | C | C | C | E | E | E | E | C | C | C | C | E | E | E | E | C | C | C | C | C | E | E | E | E | E | E | E | C | C | E | E | E | E | E | E | E | E | C | C |
|
| | H(Helix): 9(7.5%) | E(Strand): 52(43.33%) | C(Coil): 59(49.17%) |
| 1-60: |
E | B | B | B | B | B | B | B | B | E | B | E | E | B | E | E | E | E | E | E | B | E | E | E | E | B | B | E | E | E | B | E | E | E | B | B | E | B | B | E | E | E | E | B | B | B | B | B | B | B | B | E | E | B | E | B | E | B | E | B |
| 61-119: |
E | E | E | E | E | B | B | B | B | B | B | B | B | E | B | E | B | B | E | E | E | E | E | E | E | E | E | B | E | E | B | B | B | B | B | B | E | E | E | B | E | B | E | B | E | B | B | E | E | B | E | E | B | B | B | B | B | E | E | E |
|
| | e(Exposed): 61(50.83%) | b(Buried): 59(49.17%) |
| 1-60: |
T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
|
| | N(Normal): 103(85.83%) | T(Disorder): 17(14.17%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.95 |
94.29 |
| TopL/2 |
0.91 |
94.76 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.67 |
| TopL |
92.50 |
| Top2L |
62.08 |
| Alignment |
Number |
| N |
35356 |
| Neff |
2860 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9420 |
| Model 3 |
0.9578 |
| Model 4 |
0.9516 |
| Model 5 |
0.9427 |
| Average |
0.94852 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3bcw |
0.79308 |
| 1gqg |
0.78406 |
| 1juh |
0.78399 |
| 1h1i |
0.78392 |
| 1gqh |
0.78377 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.67 |
| TopL |
91.67 |
| Top2L |
62.50 |
| Alignment |
Number |
| N |
35356 |
| Neff |
2860 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9420 |
| Model 3 |
0.9341 |
| Model 4 |
0.9506 |
| Model 5 |
0.9426 |
| Average |
0.94233 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3bcw |
0.79074 |
| 4luk |
0.77237 |
| 1x7n |
0.76978 |
| 1juh |
0.76721 |
| 1h1i |
0.76708 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.33 |
| TopL |
93.33 |
| Top2L |
62.50 |
| Alignment |
Number |
| N |
35356 |
| Neff |
2860 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9578 |
| Model 2 |
0.9341 |
| Model 4 |
0.9371 |
| Model 5 |
0.9297 |
| Average |
0.93968 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3bcw |
0.79281 |
| 1juh |
0.77201 |
| 1gqg |
0.77187 |
| 1gqh |
0.77180 |
| 1h1i |
0.77174 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.33 |
| TopL |
95.83 |
| Top2L |
64.58 |
| Alignment |
Number |
| N |
35356 |
| Neff |
2860 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9516 |
| Model 2 |
0.9506 |
| Model 3 |
0.9371 |
| Model 5 |
0.9353 |
| Average |
0.94365 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3bcw |
0.79092 |
| 1juh |
0.78287 |
| 1gqg |
0.78246 |
| 1h1i |
0.78231 |
| 1gqh |
0.78175 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.67 |
| TopL |
93.33 |
| Top2L |
62.50 |
| Alignment |
Number |
| N |
35356 |
| Neff |
2860 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9427 |
| Model 2 |
0.9426 |
| Model 3 |
0.9297 |
| Model 4 |
0.9353 |
| Average |
0.93758 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3bcw |
0.78923 |
| 1juh |
0.76240 |
| 1h1i |
0.76235 |
| 1gqh |
0.76176 |
| 1gqg |
0.76154 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
