Protein sequence

>Q6FAJ7: 1-120

1-60:

M

S

L

W

L

A

G

H

G

I

T

Q

A

E

A

T

I

D

Y

P

R

P

D

R

L

V

N

G

N

P

K

R

T

H

D

L

Y

Q

H

P

H

M

N

C

G

I

W

E

C

E

I

G

M

W

E

I

H

F

61-119:

A

P

N

K

Q

E

F

Q

I

E

G

K

V

R

I

H

D

A

N

T

N

T

Y

I

E

V

L

A

G

E

A

G

V

I

P

D

F

K

G

R

F

E

V

E

T

V

K

Y

F

V

I

V

E

S

T

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

E

C

E

C

E

61-119:

C

E

C

E

C

E

C

E

C

E

C

E

C

H(Helix): 9(7.5%)

E(Strand): 52(43.33%)

C(Coil): 59(49.17%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 61(50.83%)

b(Buried): 59(49.17%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

N(Normal): 103(85.83%)

T(Disorder): 17(14.17%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.95	94.29
TopL/2	0.91	94.76

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-Q6FAJ7/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-Q6FAJ7/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-Q6FAJ7/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-Q6FAJ7/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.67
TopL	92.50
Top2L	62.08

( Alignment file )

Alignment	Number
N	35356
Neff	2860

Model comparsion

Model	TM-score
Model 2	0.9420
Model 3	0.9578
Model 4	0.9516
Model 5	0.9427
Average	0.94852

Radius Gyration

RG	RG/(2.0*L^0.4)
14.43	1.06664

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3bcw	0.79308
1gqg	0.78406
1juh	0.78399
1h1i	0.78392
1gqh	0.78377

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__742118804177398__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__742118804177398__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6FAJ7","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__742118804177398__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"742118804177398","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6FAJ7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__742118804177398__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__742118804177398__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6FAJ7","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__742118804177398__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"742118804177398","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=Q6FAJ7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__742118804177398__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-Q6FAJ7/full_length/Q6FAJ7.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-Q6FAJ7/full_length/Q6FAJ7.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

Time for openFile(work/multicom-Q6FAJ7/full_length/Q6FAJ7.casp2.pdb): 438 ms

reading 970 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

970 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__742118804177398__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-Q6FAJ7/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-Q6FAJ7/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-Q6FAJ7/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-Q6FAJ7/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.67
TopL	91.67
Top2L	62.50

( Alignment file )

Alignment	Number
N	35356
Neff	2860

Model comparsion

Model	TM-score
Model 1	0.9420
Model 3	0.9341
Model 4	0.9506
Model 5	0.9426
Average	0.94233

Radius Gyration

RG	RG/(2.0*L^0.4)
14.59	1.07847

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3bcw	0.79074
4luk	0.77237
1x7n	0.76978
1juh	0.76721
1h1i	0.76708

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-Q6FAJ7/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-Q6FAJ7/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-Q6FAJ7/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-Q6FAJ7/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	98.33
TopL	93.33
Top2L	62.50

( Alignment file )

Alignment	Number
N	35356
Neff	2860

Model comparsion

Model	TM-score
Model 1	0.9578
Model 2	0.9341
Model 4	0.9371
Model 5	0.9297
Average	0.93968

Radius Gyration

RG	RG/(2.0*L^0.4)
14.37	1.06220

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3bcw	0.79281
1juh	0.77201
1gqg	0.77187
1gqh	0.77180
1h1i	0.77174

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

spinFPS is set too fast (30) -- can't keep up!

Model 4 vs Contact (Top L/5)

./work/multicom-Q6FAJ7/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-Q6FAJ7/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-Q6FAJ7/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-Q6FAJ7/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	98.33
TopL	95.83
Top2L	64.58

( Alignment file )

Alignment	Number
N	35356
Neff	2860

Model comparsion

Model	TM-score
Model 1	0.9516
Model 2	0.9506
Model 3	0.9371
Model 5	0.9353
Average	0.94365

Radius Gyration

RG	RG/(2.0*L^0.4)
14.43	1.06664

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3bcw	0.79092
1juh	0.78287
1gqg	0.78246
1h1i	0.78231
1gqh	0.78175

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-Q6FAJ7/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-Q6FAJ7/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-Q6FAJ7/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-Q6FAJ7/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.67
TopL	93.33
Top2L	62.50

( Alignment file )

Alignment	Number
N	35356
Neff	2860

Model comparsion

Model	TM-score
Model 1	0.9427
Model 2	0.9426
Model 3	0.9297
Model 4	0.9353
Average	0.93758

Radius Gyration

RG	RG/(2.0*L^0.4)
14.43	1.06664

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3bcw	0.78923
1juh	0.76240
1h1i	0.76235
1gqh	0.76176
1gqg	0.76154

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )