Results of Structure Prediction for Target Name: Q6FDU1 ( Click )

Domain Boundary prediction ( View )

./work/multicom-Q6FDU1/Q6FDU1.domain_info.marker.jpeg

Protein sequence

>Q6FDU1: 1-186
1-60: MSANTFPAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYHR
61-119: IVWFEGHIETKVPLECQRCLEPVEIPLVSDFRLALVDDESLIERLDEDADFIVLGESESS
121-179: TKGDFATPATVDLLSLLEDELLLLMPLSPKHDACEHKHQPTVQDIVEEKRDNPFDVLASL
181-186: KGKLNS

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60: CCCCCCCCCCCHHHHHHHCCCCCCCECHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
61-119: EEEEEEEEEEEEEEEEEHHCCCCCEEEEEEEEEEEECCHHHHHHCCCCCCCEEECCCCCC
121-179: CHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
181-186: HHHCCC
H(Helix): 58(31.18%)E(Strand): 41(22.04%)C(Coil): 87(46.77%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60: EEEEEBBEEBEBEEBBEEEEEBEBEBEBEEBEEBBEBBEEEEEEBEBEBEBEBEEEEEEE
61-119: BBBBEBEBEBEBEBBBBBBBEEBEBEBEBEBBBBBBEEEEEBEEBEEEBEEBBBEEEEEE
121-179: EEEEBEEEEEBBBBEBBBEBBBBBBBBBBEBEEBEEEEEEEEEEEEEEEEEBBBEBBEEB
181-186: EEEEEE
e(Exposed): 109(58.6%)b(Buried): 77(41.4%)

Disorder prediction (N: Normal T: Disorder)

1-60: TTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
61-119: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
121-179: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTTTTTTTTTTTTNNNNNNNNNNN
181-186: NTTTTT
N(Normal): 164(88.17%)T(Disorder): 22(11.83%)

Select domain

Predicted contact map and distance map

   

Predicted distance map

./work/contact_dist/Q6FDU1_d.jpg

   

Predicted contact map

./work/contact_dist/Q6FDU1_c.jpg

Predicted Top 1 Tertiary structure

   

Predicted Top 2 Tertiary structure

   

Predicted Top 3 Tertiary structure

   

Predicted Top 4 Tertiary structure

   

Predicted Top 5 Tertiary structure

   

References

[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.