Q89YF2
multicom
Q89YF2
full_length
Q89YF2
Results of Structure Prediction for Target Name: Q89YF2 ( Click 
)
Domain Boundary prediction ( View )
>Q89YF2: 1-299
| 1-60: |
M | K | T | R | I | I | L | S | L | V | I | L | L | T | V | L | S | V | K | A | Q | E | P | V | E | T | K | I | F | P | T | N | Q | I | I | S | P | H | K | I | E | V | T | F | Q | K | T | V | H | I | L | F | P | S | E | V | K | Y | V | D |
| 61-119: |
L | G | S | F | D | I | I | A | D | K | A | T | G | A | E | N | V | V | R | I | K | A | A | V | K | G | F | E | G | E | T | N | F | S | V | I | T | A | D | G | C | F | Y | S | F | N | V | V | Y | K | D | E | P | A | Q | L | S | I | E | M |
| 121-179: |
E | D | W | L | R | D | N | P | E | G | G | I | A | G | D | R | M | F | V | K | L | K | E | L | G | G | E | T | P | L | V | V | N | R | I | M | Y | T | L | Y | K | K | N | K | R | D | I | R | H | I | G | C | K | K | Y | G | I | Q | T | L |
| 181-239: |
L | K | G | L | Y | I | N | N | D | L | L | Y | L | H | T | S | L | R | N | S | S | D | I | S | F | D | I | D | Y | I | R | F | K | V | V | D | K | K | V | A | K | R | T | A | M | Q | E | N | F | I | E | P | V | R | T | Y | N | R | L | I |
| 241-299: |
T | V | D | G | K | A | T | V | R | G | I | F | V | L | P | K | L | T | L | P | D | D | K | L | L | V | V | E | V | Y | E | K | G | G | A | R | H | Q | S | F | R | I | E | N | T | D | L | V | A | A | K | P | I | S | E | L | H | L | K |
| 1-60: |
C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | E | C | C | C | C | E | E | E | E | E | C | C | E | E | E | E | E | E | E | C | C | C | E | E | E | E | E |
| 61-119: |
C | C | C | C | C | E | E | E | E | C | C | C | C | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C | E | E | E | E | E |
| 121-179: |
C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | H | C | C | C | C | C | C | C | C | C | E | E | E | E |
| 181-239: |
E | E | E | E | E | E | C | C | C | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | C | C | C | E | E | C | C | C | C | C |
| 241-299: |
E | E | C | C | C | C | C | E | E | E | E | E | E | E | C | E | E | E | C | C | C | C | C | E | E | E | E | E | E | E | E | C | C | C | C | E | E | E | E | E | E | E | C | C | H | H | H | H | C | C | C | C | C | C | C | E | E | C | C |
| |
| | H(Helix): 39(13.04%) | E(Strand): 111(37.12%) | C(Coil): 149(49.83%) |
| 1-60: |
E | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | E | E | B | E | B | E | E | E | E | B | B | B | B | B | B | B | E | E | B | E | B | B | B |
| 61-119: |
B | B | B | E | E | B | B | B | E | E | B | E | E | B | E | B | B | B | B | B | B | B | E | E | E | E | B | E | E | E | B | B | B | B | B | B | B | E | E | B | E | B | B | B | B | B | B | B | B | E | E | E | B | E | E | B | B | B | E | B |
| 121-179: |
E | E | E | E | E | E | E | E | E | E | E | B | E | E | E | E | B | E | B | E | B | E | E | B | E | E | E | E | E | E | B | B | E | E | B | B | E | E | B | B | E | E | E | E | E | E | B | E | E | B | E | E | E | E | E | E | B | B | B | B |
| 181-239: |
B | E | B | B | B | B | E | E | E | B | B | B | B | B | B | B | B | E | B | E | B | E | B | E | B | E | B | E | B | B | E | B | B | B | E | E | E | E | E | E | E | E | E | B | E | E | E | E | E | B | E | E | E | B | E | B | E | E | E | E |
| 241-299: |
E | B | E | E | E | E | E | B | B | B | B | B | B | B | E | E | B | B | B | E | E | E | E | E | B | B | B | B | B | B | E | E | E | E | E | B | E | B | E | B | E | B | E | E | E | E | B | E | E | B | E | E | B | E | E | B | E | E | E |
| |
| | e(Exposed): 163(54.52%) | b(Buried): 136(45.48%) |
| 1-60: |
T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 241-299: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T |
| |
| | N(Normal): 293(97.99%) | T(Disorder): 6(2.01%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.96 |
95.34 |
| TopL/2 |
0.87 |
90.68 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.33 |
| TopL |
82.61 |
| Top2L |
50.84 |
| Alignment |
Number |
| N |
2763 |
| Neff |
678 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.7216 |
| Model 3 |
0.6835 |
| Model 4 |
0.5464 |
| Model 5 |
0.6083 |
| Average |
0.63995 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5l9w |
0.46795 |
| 3s5k |
0.43600 |
| 3s5m |
0.43273 |
| 5svc |
0.43146 |
| 3s5i |
0.43048 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.67 |
| TopL |
82.94 |
| Top2L |
52.01 |
| Alignment |
Number |
| N |
2763 |
| Neff |
678 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7216 |
| Model 3 |
0.6310 |
| Model 4 |
0.5330 |
| Model 5 |
0.5980 |
| Average |
0.62090 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3wky |
0.45030 |
| 5l9w |
0.44239 |
| 4yzw |
0.44194 |
| 1hcy |
0.43740 |
| 1ll1 |
0.43737 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.33 |
| TopL |
82.61 |
| Top2L |
50.33 |
| Alignment |
Number |
| N |
2763 |
| Neff |
678 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6835 |
| Model 2 |
0.6310 |
| Model 4 |
0.5606 |
| Model 5 |
0.5778 |
| Average |
0.61323 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5l9w |
0.46361 |
| 1kv3 |
0.43175 |
| 3hhs |
0.43028 |
| 1idu |
0.43014 |
| 6b3q |
0.43009 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.00 |
| TopL |
83.28 |
| Top2L |
51.51 |
| Alignment |
Number |
| N |
2763 |
| Neff |
678 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5464 |
| Model 2 |
0.5330 |
| Model 3 |
0.5606 |
| Model 5 |
0.5311 |
| Average |
0.54278 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3og2 |
0.44266 |
| 3ogv |
0.44151 |
| 3ogr |
0.44118 |
| 3ogs |
0.43850 |
| 5ihr |
0.43387 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.33 |
| TopL |
82.27 |
| Top2L |
50.67 |
| Alignment |
Number |
| N |
2763 |
| Neff |
678 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6083 |
| Model 2 |
0.5980 |
| Model 3 |
0.5778 |
| Model 4 |
0.5311 |
| Average |
0.57880 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1kcw |
0.45074 |
| 5l9w |
0.43603 |
| 5j75 |
0.43215 |
| 6k4z |
0.42993 |
| 6qb9 |
0.42987 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
