Q89Z94
multicom
Q89Z94
full_length
Q89Z94
Results of Structure Prediction for Target Name: Q89Z94 ( Click 
)
Domain Boundary prediction ( View )
>Q89Z94: 1-257
| 1-60: |
M | N | V | Y | I | Y | D | K | T | F | D | G | L | L | T | A | V | F | D | A | Y | F | R | K | T | F | P | D | F | L | L | S | E | G | D | A | L | P | L | F | Y | D | E | L | H | T | V | V | T | D | E | E | K | A | A | R | V | W | R | G |
| 61-119: |
L | Q | K | K | V | S | S | S | A | L | G | C | L | T | Q | C | W | L | S | E | L | P | D | I | G | M | V | I | F | R | Y | I | R | K | A | I | D | A | P | R | S | I | E | T | N | F | G | D | P | D | V | L | L | L | A | Q | I | W | K | K |
| 121-179: |
V | D | G | E | R | M | H | L | M | Q | F | V | R | F | Q | K | A | A | D | G | T | F | F | A | A | F | E | P | Q | Y | N | A | L | P | L | T | V | Q | H | F | K | D | R | F | A | D | Q | K | W | I | I | Y | D | M | K | R | R | Y | G | F |
| 181-239: |
Y | Y | D | L | Q | E | V | T | T | I | S | F | D | D | D | S | R | E | A | H | L | I | T | G | M | L | D | E | S | L | M | D | E | N | E | K | I | F | Q | K | L | W | K | T | Y | F | K | A | I | C | I | K | E | R | M | N | P | R | K | H |
| 241-257: |
K | K | D | M | P | V | R | Y | W | K | Y | L | T | E | K | Q | K |
| 1-60: |
C | E | E | E | E | E | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | C | C | C | C | C | C | H | H | H | C | C | C | E | E | E | C | C | C | H | H | H | H | H | H | H | H | H | H |
| 61-119: |
H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H |
| 121-179: |
H | H | H | H | H | H | H | H | H | H | H | E | E | E | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | E | C | C | C | C | E | E | E |
| 181-239: |
E | E | C | C | C | C | E | E | E | E | E | E | C | C | C | C | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | C | C | H | H | H | H |
| 241-257: |
H | H | H | C | C | H | H | H | H | H | H | C | H | H | H | C | C |
| |
| | H(Helix): 136(52.92%) | E(Strand): 37(14.4%) | C(Coil): 84(32.68%) |
| 1-60: |
E | E | B | B | B | B | E | E | E | B | E | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | E | B | B | E | E | E | E | E | B | E | E | B | B | E | E | B | E | E | B | E | E | E | E | E | E | B | E | E | B | B | E | B |
| 61-119: |
B | E | E | E | B | E | E | E | B | B | E | B | B | B | B | B | B | B | B | E | E | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | B | B | E | E | B | E | E | E | B | B | B | E | B | B | E | B | B | E | E |
| 121-179: |
B | E | E | B | B | E | E | B | E | B | B | B | E | B | E | E | B | E | E | E | B | B | B | B | B | B | B | B | E | B | B | B | B | E | B | B | B | E | B | B | B | E | B | B | E | E | B | B | B | B | B | B | B | E | E | B | E | B | B | B |
| 181-239: |
B | B | B | E | E | E | B | B | B | B | B | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | E | E | B | B | E | E | B | B | E | B | B | B | B | E | E | B | E | E | E | E | B | B |
| 241-257: |
E | E | E | B | B | E | E | B | B | E | E | B | E | E | E | E | E |
| |
| | e(Exposed): 129(50.19%) | b(Buried): 128(49.81%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 241-257: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T |
| |
| | N(Normal): 254(98.83%) | T(Disorder): 3(1.17%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.95 |
94.46 |
| TopL/2 |
0.86 |
90.19 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.67 |
| TopL |
80.16 |
| Top2L |
49.61 |
| Alignment |
Number |
| N |
1393 |
| Neff |
551 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9855 |
| Model 3 |
0.9834 |
| Model 4 |
0.9003 |
| Model 5 |
0.9855 |
| Average |
0.96368 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5f55 |
0.58868 |
| 5f56 |
0.58813 |
| 2zxo |
0.58806 |
| 2zxp |
0.58783 |
| 5f54 |
0.58699 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.67 |
| TopL |
82.10 |
| Top2L |
49.81 |
| Alignment |
Number |
| N |
1393 |
| Neff |
551 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9855 |
| Model 3 |
0.9774 |
| Model 4 |
0.8945 |
| Model 5 |
0.9829 |
| Average |
0.96008 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5f55 |
0.59601 |
| 5f56 |
0.59545 |
| 5f54 |
0.59392 |
| 2zxp |
0.59031 |
| 2zxo |
0.58983 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.67 |
| TopL |
83.27 |
| Top2L |
50.00 |
| Alignment |
Number |
| N |
1393 |
| Neff |
551 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9834 |
| Model 2 |
0.9774 |
| Model 4 |
0.8951 |
| Model 5 |
0.9819 |
| Average |
0.95945 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5f54 |
0.59242 |
| 5f56 |
0.59207 |
| 5f55 |
0.59133 |
| 2zxp |
0.59027 |
| 2zxo |
0.58984 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.22 |
| TopL |
78.60 |
| Top2L |
41.44 |
| Alignment |
Number |
| N |
1393 |
| Neff |
551 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9003 |
| Model 2 |
0.8945 |
| Model 3 |
0.8951 |
| Model 5 |
0.8937 |
| Average |
0.89590 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2zxo |
0.57883 |
| 2zxp |
0.57864 |
| 5dgo |
0.57628 |
| 5yh1 |
0.57575 |
| 1ir6 |
0.57219 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.67 |
| TopL |
81.32 |
| Top2L |
48.44 |
| Alignment |
Number |
| N |
1393 |
| Neff |
551 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9855 |
| Model 2 |
0.9829 |
| Model 3 |
0.9819 |
| Model 4 |
0.8937 |
| Average |
0.96100 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5f55 |
0.58965 |
| 5f56 |
0.58921 |
| 5f54 |
0.58755 |
| 2zxp |
0.58726 |
| 2zxo |
0.58711 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
