Q8A209
multicom
Q8A209
full_length
Q8A209
Results of Structure Prediction for Target Name: Q8A209 ( Click 
)
Domain Boundary prediction ( View )
>Q8A209: 1-244
| 1-60: |
M | N | K | K | L | F | L | A | G | L | F | C | L | V | S | F | A | L | Q | A | Q | K | D | D | L | G | L | W | T | S | V | G | M | E | K | R | L | F | R | D | F | D | I | S | L | E | G | E | F | R | S | R | D | K | L | S | E | V | G | R |
| 61-119: |
W | S | G | S | A | G | V | A | Y | K | I | T | N | W | L | K | A | A | T | A | Y | T | Y | I | Y | Y | N | H | P | S | E | I | T | N | K | G | N | V | I | P | E | Y | W | Q | P | K | H | R | F | Y | F | Q | L | T | G | K | V | S | L | N |
| 121-179: |
R | F | T | F | S | L | R | E | R | W | Q | Y | T | Y | R | P | S | Q | S | V | S | K | F | D | G | D | D | G | S | P | K | D | D | E | Y | V | K | G | K | G | K | N | V | L | R | S | R | L | Q | A | T | Y | N | I | P | K | C | S | L | T |
| 181-239: |
P | Y | A | S | C | E | L | T | H | L | L | N | D | K | G | A | I | D | K | T | R | W | T | L | G | V | E | W | K | L | S | K | H | H | G | L | D | F | Y | Y | L | Y | Q | N | H | A | D | E | D | E | A | N | G | H | V | I | G | A | G | Y |
| 241-244: |
T | F | K | F |
| 1-60: |
C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | E | C | C | C | C | E | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | H | H | H | H |
| 61-119: |
H | C | C | C | C | C | E | E | E | E | E | C | C | H | E | E | E | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | E | E | E | C | C |
| 121-179: |
C | E | E | E | E | E | H | H | H | H | H | H | H | C | C | C | C | C | C | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C |
| 181-239: |
C | E | E | E | E | E | H | E | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E |
| 241-244: |
E | E | E | C |
| |
| | H(Helix): 33(13.52%) | E(Strand): 101(41.39%) | C(Coil): 110(45.08%) |
| 1-60: |
E | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | B | B | B | B | B | E | B | E | B | E | E | E | B | E | E | E | B | E | B | E | B | E | B | B | B | B | B | E | E | E | B | E | E | B | E | E |
| 61-119: |
B | B | B | E | B | E | B | E | B | E | B | B | E | B | B | E | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | E | B | E | B | B | B | B | B | B | B | E | B | E | B | E | B | E |
| 121-179: |
E | B | E | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | B | B | B | B | B | E | B | E | B | E | B | E | E | B | E | B | B |
| 181-239: |
B | B | B | B | B | B | B | B | B | E | B | E | E | E | E | E | B | E | E | B | B | B | B | B | B | B | E | B | E | B | E | E | E | B | E | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | E | E | B | B | B | B | B | E | B |
| 241-244: |
E | B | E | E |
| |
| | e(Exposed): 111(45.49%) | b(Buried): 133(54.51%) |
| 1-60: |
T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 241-244: |
N | N | N | N |
| |
| | N(Normal): 243(99.59%) | T(Disorder): 1(0.41%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.97 |
96.57 |
| TopL/2 |
0.94 |
97.70 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
86.89 |
| Top2L |
47.95 |
| Alignment |
Number |
| N |
4223 |
| Neff |
1801 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9453 |
| Model 3 |
0.9595 |
| Model 4 |
0.9603 |
| Model 5 |
0.9743 |
| Average |
0.95985 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1uyn |
0.67241 |
| 5o68 |
0.66706 |
| 5o67 |
0.66396 |
| 4rl8 |
0.66149 |
| 4mee |
0.65936 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
88.52 |
| Top2L |
48.77 |
| Alignment |
Number |
| N |
4223 |
| Neff |
1801 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9453 |
| Model 3 |
0.9381 |
| Model 4 |
0.9355 |
| Model 5 |
0.9512 |
| Average |
0.94253 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5o68 |
0.67445 |
| 1uyn |
0.67236 |
| 5o67 |
0.67142 |
| 5o65 |
0.66353 |
| 4rl8 |
0.65901 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
85.25 |
| Top2L |
46.52 |
| Alignment |
Number |
| N |
4223 |
| Neff |
1801 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9595 |
| Model 2 |
0.9381 |
| Model 4 |
0.9450 |
| Model 5 |
0.9571 |
| Average |
0.94993 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1uyn |
0.67358 |
| 5o68 |
0.66596 |
| 5o67 |
0.66569 |
| 5o65 |
0.65932 |
| 1uyo |
0.65876 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
87.30 |
| Top2L |
48.16 |
| Alignment |
Number |
| N |
4223 |
| Neff |
1801 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9603 |
| Model 2 |
0.9355 |
| Model 3 |
0.9450 |
| Model 5 |
0.9611 |
| Average |
0.95047 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5o68 |
0.67080 |
| 5o67 |
0.66743 |
| 1uyn |
0.66719 |
| 5o65 |
0.66174 |
| 4mee |
0.65966 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
86.07 |
| Top2L |
47.54 |
| Alignment |
Number |
| N |
4223 |
| Neff |
1801 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9743 |
| Model 2 |
0.9512 |
| Model 3 |
0.9571 |
| Model 4 |
0.9611 |
| Average |
0.96093 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1uyn |
0.66629 |
| 5o68 |
0.66608 |
| 5o67 |
0.66426 |
| 4rl8 |
0.65978 |
| 5o65 |
0.65733 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
