Q9KQZ4
multicom
Q9KQZ4
full_length
Q9KQZ4
Results of Structure Prediction for Target Name: Q9KQZ4 ( Click 
)
Domain Boundary prediction ( View )
>Q9KQZ4: 1-224
| 1-60: |
M | K | L | N | P | L | I | L | G | L | L | L | S | F | S | A | G | H | S | L | A | D | V | V | L | K | V | P | E | N | I | D | L | L | S | V | N | M | Q | K | P | K | S | E | G | G | L | F | G | D | K | T | I | M | L | K | D | G | T | N |
| 61-119: |
Q | I | V | F | R | Y | I | P | T | F | D | D | G | D | D | V | K | K | V | Y | S | D | T | I | I | A | K | F | E | S | E | N | A | T | L | H | F | K | I | P | S | Y | R | N | I | K | E | A | N | E | K | I | Q | T | M | E | W | Q | L | V |
| 121-179: |
D | E | K | G | Q | S | V | A | L | V | E | D | K | L | L | N | P | G | V | Q | W | G | R | N | Y | S | Q | E | A | T | E | Y | N | Q | N | G | G | V | A | A | I | G | Y | L | K | V | V | T | N | E | A | Q | L | S | E | N | T | T | Q | V |
| 181-224: |
I | M | S | E | A | S | Q | P | L | E | V | V | G | S | S | N | N | L | T | Q | L | Q | L | W | Y | S | K | A | S | K | E | E | R | K | A | F | K | K | W | M | V | D | Q | E |
| 1-60: |
C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | E | E | E | E | C | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | C | C | C | C | E |
| 61-119: |
E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | E | E | E | E | C | C | C | E | E | E | E | E | E | C | C | C | C | E | E | E | E | E | C | C | C | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E |
| 121-179: |
E | C | C | C | C | E | E | E | E | E | E | C | E | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 181-224: |
C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C |
| |
| | H(Helix): 65(29.02%) | E(Strand): 53(23.66%) | C(Coil): 106(47.32%) |
| 1-60: |
E | E | B | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | B | E | B | E | B | E | E | E | B | E | B | B | B | B | B | B | E | E | B | E | E | E | E | E | B | E | E | E | E | E | B | E | B | E | E | B | E | B |
| 61-119: |
B | B | B | B | B | B | E | E | E | B | E | E | E | E | E | E | E | E | B | E | B | E | B | B | B | B | B | B | E | B | E | E | E | E | B | E | B | E | B | E | E | B | E | E | E | E | E | B | E | E | B | E | E | E | B | E | B | E | B | B |
| 121-179: |
E | E | E | E | E | E | B | E | B | E | B | E | E | B | E | E | E | E | B | B | B | B | E | B | B | B | E | B | B | E | E | B | B | E | E | E | E | B | B | B | B | E | E | B | B | B | B | E | E | E | E | E | E | E | E | E | E | E | E | E |
| 181-224: |
E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | E | B | B | E | E | B | B | E | E | B | E | E | E | E | B | E | E | B | B | E | B | B | E | E | E | E |
| |
| | e(Exposed): 129(57.59%) | b(Buried): 95(42.41%) |
| 1-60: |
T | N | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T |
| 181-224: |
T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T |
| |
| | N(Normal): 187(83.48%) | T(Disorder): 37(16.52%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.97 |
96.66 |
| TopL/2 |
0.88 |
92.41 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.21 |
| TopL |
75.89 |
| Top2L |
43.97 |
| Alignment |
Number |
| N |
1476 |
| Neff |
528 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.7450 |
| Model 3 |
0.7731 |
| Model 4 |
0.7547 |
| Model 5 |
0.7301 |
| Average |
0.75073 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3gxi |
0.47771 |
| 2j25 |
0.47753 |
| 2v3f |
0.47691 |
| 6moz |
0.47645 |
| 3rik |
0.47597 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.11 |
| TopL |
77.68 |
| Top2L |
44.20 |
| Alignment |
Number |
| N |
1476 |
| Neff |
528 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7450 |
| Model 3 |
0.7830 |
| Model 4 |
0.7636 |
| Model 5 |
0.8269 |
| Average |
0.77963 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1aqf |
0.46978 |
| 1pkn |
0.46891 |
| 6v74 |
0.46744 |
| 4kcv |
0.46679 |
| 4wj8 |
0.46640 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.43 |
| TopL |
75.89 |
| Top2L |
42.86 |
| Alignment |
Number |
| N |
1476 |
| Neff |
528 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7731 |
| Model 2 |
0.7830 |
| Model 4 |
0.7989 |
| Model 5 |
0.7899 |
| Average |
0.78622 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4j5t |
0.45951 |
| 5ngl |
0.44790 |
| 5mhf |
0.44324 |
| 6r3t |
0.44128 |
| 1a0e |
0.44101 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.32 |
| TopL |
75.45 |
| Top2L |
43.53 |
| Alignment |
Number |
| N |
1476 |
| Neff |
528 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7547 |
| Model 2 |
0.7636 |
| Model 3 |
0.7989 |
| Model 5 |
0.7590 |
| Average |
0.76905 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1veo |
0.47569 |
| 1b90 |
0.47547 |
| 1j18 |
0.47546 |
| 1vep |
0.47485 |
| 1j12 |
0.47445 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.43 |
| TopL |
75.45 |
| Top2L |
43.08 |
| Alignment |
Number |
| N |
1476 |
| Neff |
528 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7301 |
| Model 2 |
0.8269 |
| Model 3 |
0.7899 |
| Model 4 |
0.7590 |
| Average |
0.77647 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6q1f |
0.46286 |
| 1f3w |
0.44842 |
| 6v76 |
0.44532 |
| 4ip7 |
0.44434 |
| 4og5 |
0.44234 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
