Protein sequence

>WP_004100416: 1-412

1-60:

M

I

V

R

P

F

R

G

L

R

P

K

N

M

I

E

K

V

A

K

P

Y

D

V

T

E

A

R

K

E

A

E

R

N

P

Y

T

F

Y

K

V

T

R

P

E

I

N

F

D

R

E

V

D

T

H

61-119:

S

D

E

V

I

L

K

G

K

E

V

L

E

F

Q

K

N

G

I

M

I

L

E

D

K

P

A

I

Y

V

Y

K

E

W

K

G

L

S

Q

I

G

I

Y

A

T

F

S

T

K

E

Y

R

D

G

K

I

K

121-179:

H

E

L

T

R

K

D

K

E

D

E

R

A

R

H

V

K

L

K

A

H

T

G

P

V

F

L

M

Y

R

S

K

P

E

L

D

T

L

I

K

H

T

S

K

I

P

E

Y

D

Y

V

D

E

T

G

I

H

181-239:

T

L

W

V

K

D

E

N

E

I

N

E

I

V

E

A

F

K

S

V

D

A

F

Y

I

A

D

G

H

R

A

R

A

E

F

A

K

E

N

P

N

H

T

G

N

E

Y

N

F

L

241-299:

A

V

L

F

P

H

N

Q

L

N

I

L

D

Y

N

R

V

K

D

L

N

G

L

S

E

F

L

N

K

V

S

E

K

F

D

V

E

R

V

E

K

S

P

Y

K

P

T

K

H

E

F

G

M

Y

L

N

301-359:

K

W

Y

K

L

T

P

K

G

T

F

D

E

N

D

V

S

L

D

V

S

I

L

Q

E

N

L

N

P

I

L

G

I

E

N

P

R

T

D

K

R

I

D

F

V

G

I

K

G

I

E

L

E

361-412:

R

L

V

D

S

G

E

F

K

V

A

F

A

L

Y

P

T

S

I

D

L

K

V

A

D

E

G

K

I

M

P

K

S

T

W

F

E

P

K

L

K

S

G

I

V

H

L

I

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

C

H

C

H

C

E

C

61-119:

C

H

C

E

C

E

C

E

C

E

C

121-179:

C

H

C

E

C

H

C

E

C

E

181-239:

E

C

H

C

E

C

H

C

E

241-299:

E

C

H

E

C

H

C

E

C

E

C

301-359:

C

E

C

H

C

E

C

H

361-412:

H

C

E

C

H

C

E

C

E

C

H(Helix): 125(30.34%)

E(Strand): 85(20.63%)

C(Coil): 202(49.03%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-299:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

301-359:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

361-412:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 203(49.27%)

b(Buried): 209(50.73%)

Disorder prediction (N: Normal T: Disorder)

1-60:

N

61-119:

N

121-179:

N

181-239:

N

241-299:

N

301-359:

N

361-412:

N

N(Normal): 412(100%)

T(Disorder): 0(0%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.97	96.75
TopL/2	0.94	97.68

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-WP_004100416/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-WP_004100416/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-WP_004100416/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-WP_004100416/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	82.93
TopL/2	72.82
TopL	72.09
Top2L	57.40

( Alignment file )

Alignment	Number
N	6712
Neff	1985

Model comparsion

Model	TM-score
Model 2	0.9130
Model 3	0.8312
Model 4	0.8239
Model 5	0.8163
Average	0.84610

Radius Gyration

RG	RG/(2.0*L^0.4)
24.04	1.08130

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ujd	0.43793
5x0e	0.43657
5x0j	0.43636
5x0k	0.42838
5x0b	0.42799

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Model 2 vs Contact (Top L/5)

./work/multicom-WP_004100416/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-WP_004100416/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-WP_004100416/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-WP_004100416/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	79.27
TopL/2	71.84
TopL	71.84
Top2L	58.37

( Alignment file )

Alignment	Number
N	6712
Neff	1985

Model comparsion

Model	TM-score
Model 1	0.9130
Model 3	0.8376
Model 4	0.8027
Model 5	0.7985
Average	0.83795

Radius Gyration

RG	RG/(2.0*L^0.4)
24.41	1.09794

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ujd	0.43484
5x0j	0.43133
5x0e	0.43123
5x0b	0.42520
5x0k	0.42466

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Model 3 vs Contact (Top L/5)

./work/multicom-WP_004100416/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-WP_004100416/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-WP_004100416/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-WP_004100416/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	81.71
TopL/2	73.30
TopL	71.84
Top2L	57.65

( Alignment file )

Alignment	Number
N	6712
Neff	1985

Model comparsion

Model	TM-score
Model 1	0.8312
Model 2	0.8376
Model 4	0.8121
Model 5	0.8004
Average	0.82032

Radius Gyration

RG	RG/(2.0*L^0.4)
23.84	1.07230

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ujd	0.43774
5x0j	0.43507
5x0e	0.43387
5x0k	0.42787
5x0b	0.42779

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Model 4 vs Contact (Top L/5)

./work/multicom-WP_004100416/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-WP_004100416/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-WP_004100416/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-WP_004100416/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	87.80
TopL/2	80.10
TopL	74.76
Top2L	60.92

( Alignment file )

Alignment	Number
N	6712
Neff	1985

Model comparsion

Model	TM-score
Model 1	0.8239
Model 2	0.8027
Model 3	0.8121
Model 5	0.9489
Average	0.84690

Radius Gyration

RG	RG/(2.0*L^0.4)
20.89	0.93961

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5x0e	0.44019
5x0j	0.43979
5ujd	0.43855
5x0b	0.42523
5x0k	0.42452

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Model 5 vs Contact (Top L/5)

./work/multicom-WP_004100416/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-WP_004100416/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-WP_004100416/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-WP_004100416/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	86.59
TopL/2	78.64
TopL	73.30
Top2L	59.59

( Alignment file )

Alignment	Number
N	6712
Neff	1985

Model comparsion

Model	TM-score
Model 1	0.8163
Model 2	0.7985
Model 3	0.8004
Model 4	0.9489
Average	0.84103

Radius Gyration

RG	RG/(2.0*L^0.4)
21.03	0.94591

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5x0e	0.44337
5x0j	0.44328
5ujd	0.44122
5x0b	0.43296
5x0k	0.43280

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )