Protein sequence

>WP_010881136: 1-183

1-60:

M

R

L

P

E

R

L

V

E

A

I

A

E

S

I

Q

K

L

G

K

E

G

I

L

E

L

E

D

P

A

T

F

K

I

S

L

F

K

E

A

D

R

E

K

E

L

E

K

A

K

A

V

L

61-119:

R

E

N

L

E

V

L

E

R

E

N

I

D

Y

R

T

A

F

L

A

V

K

R

K

L

A

E

M

N

I

N

V

D

R

E

R

L

N

Q

I

N

R

I

M

D

L

I

M

K

D

E

S

V

E

I

Y

E

121-179:

D

P

V

I

R

K

I

R

E

I

V

L

G

A

L

K

I

E

I

E

K

T

V

R

Q

R

I

K

Y

S

R

D

L

E

G

S

P

E

W

Q

I

L

W

K

R

I

Y

E

D

E

L

K

R

181-183:

G

L

A

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

E

C

H

61-119:

H

C

H

C

H

C

E

C

H

C

H

C

H

C

121-179:

C

H

C

H

C

181-183:

C

H(Helix): 142(77.6%)

E(Strand): 4(2.19%)

C(Coil): 37(20.22%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-183:

E

e(Exposed): 105(57.38%)

b(Buried): 78(42.62%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

181-183:

N

T

N(Normal): 181(98.91%)

T(Disorder): 2(1.09%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.98	97.38
TopL/2	0.85	89.34

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-WP_010881136/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-WP_010881136/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-WP_010881136/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-WP_010881136/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	88.04
TopL	57.38
Top2L	30.33

( Alignment file )

Alignment	Number
N	1934
Neff	214

Model comparsion

Model	TM-score
Model 2	0.9953
Model 3	0.9908
Model 4	0.9921
Model 5	0.9866
Average	0.99120

Radius Gyration

RG	RG/(2.0*L^0.4)
20.05	1.24768

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4du1	0.53915
4du3	0.53900
3uiq	0.53878
3nhg	0.53862
3nci	0.53860

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-WP_010881136/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-WP_010881136/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-WP_010881136/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-WP_010881136/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	89.13
TopL	60.11
Top2L	32.24

( Alignment file )

Alignment	Number
N	1934
Neff	214

Model comparsion

Model	TM-score
Model 1	0.9953
Model 3	0.9949
Model 4	0.9948
Model 5	0.9889
Average	0.99347

Radius Gyration

RG	RG/(2.0*L^0.4)
20.04	1.24706

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6r4l	0.53745
3kd1	0.53643
3uiq	0.53605
4du3	0.53551
3nhg	0.53530

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-WP_010881136/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-WP_010881136/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-WP_010881136/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-WP_010881136/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	89.13
TopL	59.02
Top2L	31.42

( Alignment file )

Alignment	Number
N	1934
Neff	214

Model comparsion

Model	TM-score
Model 1	0.9908
Model 2	0.9949
Model 4	0.9973
Model 5	0.9919
Average	0.99372

Radius Gyration

RG	RG/(2.0*L^0.4)
20.01	1.24519

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4zit	0.54027
6r4l	0.53908
4ziv	0.53737
3kd1	0.53693
3uiq	0.53606

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-WP_010881136/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-WP_010881136/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-WP_010881136/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-WP_010881136/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	91.30
TopL	59.56
Top2L	32.24

( Alignment file )

Alignment	Number
N	1934
Neff	214

Model comparsion

Model	TM-score
Model 1	0.9921
Model 2	0.9948
Model 3	0.9973
Model 5	0.9909
Average	0.99377

Radius Gyration

RG	RG/(2.0*L^0.4)
20.01	1.24519

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3uiq	0.53830
4du1	0.53808
4du3	0.53792
6r4l	0.53790
4zit	0.53744

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-WP_010881136/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-WP_010881136/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-WP_010881136/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-WP_010881136/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	88.04
TopL	57.92
Top2L	30.60

( Alignment file )

Alignment	Number
N	1934
Neff	214

Model comparsion

Model	TM-score
Model 1	0.9866
Model 2	0.9889
Model 3	0.9919
Model 4	0.9909
Average	0.98957

Radius Gyration

RG	RG/(2.0*L^0.4)
19.96	1.24208

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3kd1	0.54226
3uiq	0.54194
4du3	0.54173
4du1	0.54169
4dts	0.54095

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )