WP_073072703
multicom
WP_073072703
full_length
WP_073072703
Results of Structure Prediction for Target Name: WP_073072703 ( Click 
)
Domain Boundary prediction ( View )
>WP_073072703: 1-224
| 1-60: |
M | I | E | V | S | S | L | I | L | K | K | N | K | N | K | A | K | S | F | F | R | T | K | H | T | K | Y | Y | T | F | E | D | D | D | I | L | T | L | T | I | Y | N | N | R | V | G | A | L | G | M | V | A | Q | P | Y | F | L | K | F | N |
| 61-119: |
E | I | I | I | E | G | N | K | L | I | F | D | Y | K | N | V | I | D | D | F | K | I | Y | N | P | K | L | Q | R | V | N | F | Y | E | N | F | E | K | I | A | K | I | L | E | E | K | I | D | N | R | I | F | S | K | I | M | N | D | L | N |
| 121-179: |
Q | T | E | Y | I | K | L | I | G | F | G | P | G | L | T | P | L | F | D | D | I | L | S | G | I | L | L | L | K | S | F | Y | S | Q | N | F | D | K | E | S | I | L | K | I | A | K | E | R | T | N | D | I | S | F | Y | Q | L | Y | Y | A |
| 181-224: |
S | N | G | Y | A | P | K | P | V | K | M | Y | L | E | N | G | I | K | E | F | L | L | N | M | G | D | T | S | G | L | G | W | M | L | G | I | S | F | F | F | E | L | E | G |
| 1-60: |
C | E | E | E | H | H | H | H | H | H | H | C | H | H | H | C | E | E | H | E | E | C | C | C | E | E | E | E | E | E | C | C | C | C | E | E | E | E | E | E | C | C | C | C | H | C | H | E | C | C | C | C | C | C | H | H | E | E | E | C |
| 61-119: |
E | E | E | E | C | C | C | E | E | E | E | E | C | E | E | E | E | C | C | C | E | E | C | C | C | C | E | E | E | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | C | H | H | H | H | H | H | H | H | H | C | C | C |
| 121-179: |
H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | H | H |
| 181-224: |
H | C | C | C | C | C | C | C | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | E | C | C | C |
|
| | H(Helix): 93(41.52%) | E(Strand): 51(22.77%) | C(Coil): 80(35.71%) |
| 1-60: |
E | B | E | B | B | E | E | B | B | E | E | E | E | E | E | B | E | E | B | B | E | B | E | E | E | E | B | B | E | B | E | E | E | E | B | B | B | B | B | B | B | B | B | E | B | B | B | B | B | B | B | B | E | E | B | B | B | E | B | E |
| 61-119: |
E | B | B | B | E | E | B | E | B | B | B | B | B | E | B | B | B | E | E | B | E | B | B | E | B | E | B | E | E | B | E | E | E | E | E | B | E | E | B | B | E | B | B | E | E | E | B | E | E | E | B | B | B | E | B | B | E | E | B | E |
| 121-179: |
E | E | E | B | E | E | B | B | B | B | B | E | E | B | B | E | B | B | E | B | B | B | B | B | B | B | B | B | E | B | B | B | E | E | E | B | E | E | E | B | B | B | E | B | B | E | E | E | E | E | E | B | B | B | B | B | B | B | B | B |
| 181-224: |
B | E | E | B | B | E | E | B | B | E | E | B | B | E | E | E | B | E | E | B | B | B | E | B | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E |
|
| | e(Exposed): 96(42.86%) | b(Buried): 128(57.14%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-224: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
|
| | N(Normal): 224(100%) | T(Disorder): 0(0%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.91 |
90.50 |
| TopL/2 |
0.77 |
80.43 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
90.18 |
| TopL |
69.64 |
| Top2L |
43.97 |
| Alignment |
Number |
| N |
5215 |
| Neff |
1574 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9910 |
| Model 3 |
0.9860 |
| Model 4 |
0.9922 |
| Model 5 |
0.9835 |
| Average |
0.98818 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5y5z |
0.47745 |
| 5knd |
0.47615 |
| 3vr6 |
0.47598 |
| 5zea |
0.47597 |
| 6vq7 |
0.47484 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
91.96 |
| TopL |
71.88 |
| Top2L |
45.76 |
| Alignment |
Number |
| N |
5215 |
| Neff |
1574 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9910 |
| Model 3 |
0.9902 |
| Model 4 |
0.9919 |
| Model 5 |
0.9827 |
| Average |
0.98895 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3vr6 |
0.47483 |
| 5knd |
0.47456 |
| 5zea |
0.47396 |
| 5voy |
0.47309 |
| 6vq7 |
0.47254 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
91.07 |
| TopL |
69.20 |
| Top2L |
44.20 |
| Alignment |
Number |
| N |
5215 |
| Neff |
1574 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9860 |
| Model 2 |
0.9902 |
| Model 4 |
0.9890 |
| Model 5 |
0.9859 |
| Average |
0.98777 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3vr6 |
0.47641 |
| 5voy |
0.47624 |
| 5knd |
0.47608 |
| 5zea |
0.47573 |
| 5y5z |
0.47532 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
91.07 |
| TopL |
70.54 |
| Top2L |
45.09 |
| Alignment |
Number |
| N |
5215 |
| Neff |
1574 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9922 |
| Model 2 |
0.9919 |
| Model 3 |
0.9890 |
| Model 5 |
0.9849 |
| Average |
0.98950 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5voy |
0.47644 |
| 5knd |
0.47397 |
| 3vr6 |
0.47388 |
| 5voz |
0.47379 |
| 6vq7 |
0.47318 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
91.96 |
| TopL |
71.43 |
| Top2L |
43.75 |
| Alignment |
Number |
| N |
5215 |
| Neff |
1574 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9835 |
| Model 2 |
0.9827 |
| Model 3 |
0.9859 |
| Model 4 |
0.9849 |
| Average |
0.98425 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5voy |
0.47684 |
| 5voz |
0.47487 |
| 6vq9 |
0.47481 |
| 6vq6 |
0.47481 |
| 6vq7 |
0.47452 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
