Protein sequence

>WP_073072703: 1-224

1-60:

M

I

E

V

S

L

I

L

K

N

K

N

K

A

K

S

F

R

T

K

H

T

K

Y

T

F

E

D

I

L

T

L

T

I

Y

N

R

V

G

A

L

G

M

V

A

Q

P

Y

F

L

K

F

N

61-119:

E

I

E

G

N

K

L

I

F

D

Y

K

N

V

I

D

F

K

I

Y

N

P

K

L

Q

R

V

N

F

Y

E

N

F

E

K

I

A

K

I

L

E

K

I

D

N

R

I

F

S

K

I

M

N

D

L

N

121-179:

Q

T

E

Y

I

K

L

I

G

F

G

P

G

L

T

P

L

F

D

I

L

S

G

I

L

K

S

F

Y

S

Q

N

F

D

K

E

S

I

L

K

I

A

K

E

R

T

N

D

I

S

F

Y

Q

L

Y

A

181-224:

S

N

G

Y

A

P

K

P

V

K

M

Y

L

E

N

G

I

K

E

F

L

N

M

G

D

T

S

G

L

G

W

M

L

G

I

S

F

E

L

E

G

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

H

C

H

C

E

H

E

C

E

C

E

C

H

C

H

E

C

H

E

C

61-119:

E

C

E

C

E

C

E

C

E

C

H

C

H

C

121-179:

H

C

H

C

H

C

H

181-224:

H

C

H

C

H

C

E

C

H(Helix): 93(41.52%)

E(Strand): 51(22.77%)

C(Coil): 80(35.71%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-224:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 96(42.86%)

b(Buried): 128(57.14%)

Disorder prediction (N: Normal T: Disorder)

1-60:

N

61-119:

N

121-179:

N

181-224:

N

N(Normal): 224(100%)

T(Disorder): 0(0%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.91	90.50
TopL/2	0.77	80.43

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-WP_073072703/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-WP_073072703/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-WP_073072703/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-WP_073072703/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	90.18
TopL	69.64
Top2L	43.97

( Alignment file )

Alignment	Number
N	5215
Neff	1574

Model comparsion

Model	TM-score
Model 2	0.9910
Model 3	0.9860
Model 4	0.9922
Model 5	0.9835
Average	0.98818

Radius Gyration

RG	RG/(2.0*L^0.4)
18.07	1.03712

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5y5z	0.47745
5knd	0.47615
3vr6	0.47598
5zea	0.47597
6vq7	0.47484

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-WP_073072703/full_length/WP_073072703.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-WP_073072703/full_length/WP_073072703.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

JSmol exec jsmolApplet_M23d3 start applet null

Jmol JavaScript applet jsmolApplet_M23d3__846703556568813__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d3__846703556568813__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d3","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d3__846703556568813__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"846703556568813","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d3 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d3__846703556568813__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-WP_073072703/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-WP_073072703/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-WP_073072703/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-WP_073072703/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	91.96
TopL	71.88
Top2L	45.76

( Alignment file )

Alignment	Number
N	5215
Neff	1574

Model comparsion

Model	TM-score
Model 1	0.9910
Model 3	0.9902
Model 4	0.9919
Model 5	0.9827
Average	0.98895

Radius Gyration

RG	RG/(2.0*L^0.4)
18.05	1.03597

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3vr6	0.47483
5knd	0.47456
5zea	0.47396
5voy	0.47309
6vq7	0.47254

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__846703556568813__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__846703556568813__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__846703556568813__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"846703556568813","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__846703556568813__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__846703556568813__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__846703556568813__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"846703556568813","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__846703556568813__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-WP_073072703/full_length/WP_073072703.casp3.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-WP_073072703/full_length/WP_073072703.casp3.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-WP_073072703/full_length/WP_073072703.casp3.pdb): 212 ms

reading 1851 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1851 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

Time for openFile(work/multicom-WP_073072703/full_length/WP_073072703.casp2.pdb): 898 ms

reading 1851 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1851 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__846703556568813__ ready

Model 3 vs Contact (Top L/5)

./work/multicom-WP_073072703/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-WP_073072703/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-WP_073072703/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-WP_073072703/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	91.07
TopL	69.20
Top2L	44.20

( Alignment file )

Alignment	Number
N	5215
Neff	1574

Model comparsion

Model	TM-score
Model 1	0.9860
Model 2	0.9902
Model 4	0.9890
Model 5	0.9859
Average	0.98777

Radius Gyration

RG	RG/(2.0*L^0.4)
18.04	1.03540

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3vr6	0.47641
5voy	0.47624
5knd	0.47608
5zea	0.47573
5y5z	0.47532

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-WP_073072703/full_length/WP_073072703.casp4.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-WP_073072703/full_length/WP_073072703.casp4.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-WP_073072703/full_length/WP_073072703.casp4.pdb): 206 ms

reading 1851 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1851 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

JSmol exec jsmolApplet_M23d5 start applet null

Jmol JavaScript applet jsmolApplet_M23d5__846703556568813__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d5__846703556568813__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d5","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d5__846703556568813__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d5_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"846703556568813","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d5 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d5__846703556568813__ ready

Model 4 vs Contact (Top L/5)

./work/multicom-WP_073072703/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-WP_073072703/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-WP_073072703/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-WP_073072703/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	91.07
TopL	70.54
Top2L	45.09

( Alignment file )

Alignment	Number
N	5215
Neff	1574

Model comparsion

Model	TM-score
Model 1	0.9922
Model 2	0.9919
Model 3	0.9890
Model 5	0.9849
Average	0.98950

Radius Gyration

RG	RG/(2.0*L^0.4)
18.04	1.03540

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5voy	0.47644
5knd	0.47397
3vr6	0.47388
5voz	0.47379
6vq7	0.47318

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

spinFPS is set too fast (30) -- can't keep up!

JSmol exec jsmolApplet_M23d4 loadClazz null

JSmol exec jsmolApplet_M23d4 start applet null

Jmol JavaScript applet jsmolApplet_M23d4__846703556568813__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d4__846703556568813__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d4","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d4__846703556568813__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d4_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"846703556568813","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=WP_073072703"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d4 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d4__846703556568813__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-WP_073072703/full_length/WP_073072703.casp5.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-WP_073072703/full_length/WP_073072703.casp5.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-WP_073072703/full_length/WP_073072703.casp5.pdb): 193 ms

reading 1851 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1851 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

Model 5 vs Contact (Top L/5)

./work/multicom-WP_073072703/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-WP_073072703/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-WP_073072703/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-WP_073072703/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	91.96
TopL	71.43
Top2L	43.75

( Alignment file )

Alignment	Number
N	5215
Neff	1574

Model comparsion

Model	TM-score
Model 1	0.9835
Model 2	0.9827
Model 3	0.9859
Model 4	0.9849
Average	0.98425

Radius Gyration

RG	RG/(2.0*L^0.4)
18.11	1.03942

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5voy	0.47684
5voz	0.47487
6vq9	0.47481
6vq6	0.47481
6vq7	0.47452

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )