WP_163328182
multicom
WP_163328182
full_length
WP_163328182
Results of Structure Prediction for Target Name: WP_163328182 ( Click 
)
Domain Boundary prediction ( View )
>WP_163328182: 1-208
| 1-60: |
M | K | L | S | R | E | D | I | L | F | F | L | L | N | G | F | V | K | T | L | K | I | E | V | K | F | L | E | N | V | K | F | P | S | I | I | T | F | W | H | G | R | M | F | L | L | P | F | V | F | A | N | Y | A | D | K | V | S | V | L |
| 61-119: |
I | S | R | H | R | D | G | E | L | A | A | R | L | I | E | K | L | G | F | S | T | V | R | G | S | T | G | K | G | K | G | G | D | R | A | F | R | E | M | V | N | I | L | E | S | G | K | S | V | A | I | T | P | D | G | P | R | G | P | K |
| 121-179: |
E | V | F | K | P | G | A | A | K | L | S | I | V | T | G | V | P | V | Y | P | V | A | F | S | T | S | R | G | K | E | L | S | S | W | D | N | F | L | L | P | Y | P | F | S | K | C | K | V | L | V | G | K | P | L | Y | P | K | E | K | E |
| 181-208: |
D | I | D | F | Y | T | K | R | L | E | L | A | L | K | D | L | T | K | L | C | D | Q | E | T | G | W | K | I |
| 1-60: |
C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | E | E | E | E | C | C | C | H | C | C | C | C | C | E | E | E | E | E | E | C | H | H | H | E | H | H | H | H | H | H | C | C | C | C | C | C | E | E | E | E |
| 61-119: |
E | E | C | C | C | C | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | E | E | E | E | E | C | C | C | C | C | C | C | C |
| 121-179: |
C | C | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E | E | E | E | C | C | C | E | E | E | E | C | C | C | C | C | E | E | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | H | H |
| 181-208: |
H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C |
| |
| | H(Helix): 82(39.42%) | E(Strand): 44(21.15%) | C(Coil): 82(39.42%) |
| 1-60: |
E | E | E | B | B | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | B | E | B | E | E | E | E | E | E | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | B | B | B | B |
| 61-119: |
B | B | E | B | E | E | B | E | B | B | B | B | B | B | E | E | B | E | B | E | B | B | B | B | B | B | E | E | E | E | E | B | B | E | B | B | B | E | B | B | E | B | B | E | E | E | B | B | B | B | B | B | B | B | B | B | E | B | E | E |
| 121-179: |
B | E | B | E | E | B | B | B | B | B | B | E | E | B | E | B | B | B | B | B | B | B | B | B | B | E | E | B | B | E | B | E | B | B | B | E | B | E | B | B | B | B | B | B | E | B | B | B | B | B | B | E | B | B | E | B | E | E | E | E |
| 181-208: |
E | B | E | E | B | B | E | E | B | E | E | B | B | E | E | B | E | E | E | B | E | E | E | B | E | B | E | E |
| |
| | e(Exposed): 79(37.98%) | b(Buried): 129(62.02%) |
| 1-60: |
T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-208: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| |
| | N(Normal): 207(99.52%) | T(Disorder): 1(0.48%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.98 |
97.47 |
| TopL/2 |
0.94 |
98.21 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.04 |
| TopL |
91.83 |
| Top2L |
63.94 |
| Alignment |
Number |
| N |
46190 |
| Neff |
14197 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9761 |
| Model 3 |
0.9806 |
| Model 4 |
0.9721 |
| Model 5 |
0.9767 |
| Average |
0.97637 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1k30 |
0.74197 |
| 5kym |
0.73295 |
| 1iuq |
0.72370 |
| 5f31 |
0.63589 |
| 5f34 |
0.63372 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.04 |
| TopL |
90.38 |
| Top2L |
64.42 |
| Alignment |
Number |
| N |
46190 |
| Neff |
14197 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9761 |
| Model 3 |
0.9714 |
| Model 4 |
0.9714 |
| Model 5 |
0.9789 |
| Average |
0.97445 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1k30 |
0.74556 |
| 5kym |
0.72974 |
| 1iuq |
0.72841 |
| 5f31 |
0.63574 |
| 5f34 |
0.63508 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
92.31 |
| Top2L |
65.87 |
| Alignment |
Number |
| N |
46190 |
| Neff |
14197 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9806 |
| Model 2 |
0.9714 |
| Model 4 |
0.9712 |
| Model 5 |
0.9744 |
| Average |
0.97440 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1k30 |
0.73859 |
| 5kym |
0.72663 |
| 1iuq |
0.72225 |
| 5f31 |
0.63515 |
| 5f34 |
0.63315 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
99.04 |
| TopL |
91.83 |
| Top2L |
65.14 |
| Alignment |
Number |
| N |
46190 |
| Neff |
14197 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9721 |
| Model 2 |
0.9714 |
| Model 3 |
0.9712 |
| Model 5 |
0.9737 |
| Average |
0.97210 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1k30 |
0.73525 |
| 5kym |
0.72558 |
| 1iuq |
0.71927 |
| 5f31 |
0.63678 |
| 5f34 |
0.63503 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
100.00 |
| TopL |
92.79 |
| Top2L |
66.11 |
| Alignment |
Number |
| N |
46190 |
| Neff |
14197 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9767 |
| Model 2 |
0.9789 |
| Model 3 |
0.9744 |
| Model 4 |
0.9737 |
| Average |
0.97593 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1k30 |
0.73806 |
| 5kym |
0.72366 |
| 1iuq |
0.72013 |
| 5f31 |
0.63780 |
| 5f34 |
0.63628 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
