Protein sequence

>spO43272: 1-600

1-60:

M

A

L

R

A

L

P

A

L

R

P

C

I

P

R

F

V

Q

L

S

T

A

P

A

S

R

E

Q

P

A

G

P

A

V

P

G

S

A

T

A

V

R

P

V

P

A

V

D

F

G

N

A

Q

E

61-119:

A

Y

R

S

R

T

W

E

L

A

R

S

L

V

L

R

L

C

A

W

P

A

L

A

R

H

E

Q

L

Y

V

S

R

K

L

G

Q

R

L

F

N

K

L

M

K

M

T

F

Y

G

H

F

V

A

G

121-179:

E

D

Q

E

S

I

Q

P

L

R

H

Y

R

A

F

G

V

S

A

I

L

D

Y

G

V

E

D

L

S

P

E

A

E

H

K

E

M

E

S

C

T

S

A

E

R

D

G

S

G

T

N

K

R

D

K

Q

181-239:

Y

Q

A

H

R

A

F

G

D

R

N

G

V

I

S

A

R

T

Y

F

Y

A

N

E

A

K

C

D

S

H

M

E

T

F

L

R

C

I

E

A

S

G

R

V

S

D

G

F

I

A

I

K

L

T

A

L

G

R

241-299:

P

Q

F

L

Q

F

S

E

V

L

A

K

W

R

C

F

H

Q

M

A

V

E

Q

G

Q

A

G

L

A

M

D

T

K

L

E

V

A

V

L

Q

E

S

V

A

K

L

G

I

A

S

R

A

E

I

E

D

W

301-359:

F

T

A

E

T

L

G

V

S

G

T

M

D

L

D

W

S

L

I

D

S

R

T

K

L

S

K

H

L

V

P

N

A

Q

T

G

Q

L

E

P

L

S

R

F

T

E

L

Q

M

T

R

M

L

361-419:

Q

R

M

D

V

L

A

K

A

T

E

M

G

V

R

L

M

V

D

A

E

Q

T

Y

F

Q

P

A

I

S

R

L

T

L

E

M

Q

R

K

F

N

V

E

K

P

L

I

F

N

T

Y

Q

C

Y

L

K

D

A

Y

421-479:

D

N

V

T

L

D

V

E

L

A

R

E

G

W

C

F

G

A

K

L

V

R

G

A

Y

L

A

Q

E

R

A

R

A

E

I

G

Y

E

D

P

I

N

P

T

Y

E

A

T

N

A

M

Y

H

R

C

L

D

Y

481-539:

V

L

E

L

K

H

N

A

K

A

K

V

M

V

A

S

H

N

E

D

T

V

R

F

A

L

R

M

E

L

G

L

H

P

A

D

H

Q

V

Y

F

G

Q

L

G

M

C

D

Q

I

S

F

P

L

G

Q

541-599:

A

G

Y

P

V

Y

K

Y

V

P

Y

G

P

V

M

E

V

L

P

Y

L

S

R

A

L

E

N

S

L

M

K

G

T

H

R

E

R

Q

L

W

L

E

L

R

L

R

T

G

N

L

F

H

R

P

A

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

H

61-119:

H

C

H

C

H

C

H

C

H

E

C

121-179:

C

H

C

E

C

H

C

H

C

181-239:

C

H

C

H

C

E

H

C

241-299:

H

C

H

C

H

301-359:

H

C

H

C

H

C

H

C

E

C

H

361-419:

H

C

E

C

H

C

H

C

H

421-479:

H

C

E

C

H

C

H

481-539:

H

C

E

C

H

C

E

H

C

541-599:

C

E

C

H

C

H

C

H(Helix): 317(52.83%)

E(Strand): 34(5.67%)

C(Coil): 249(41.5%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

241-299:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

301-359:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

361-419:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

421-479:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

481-539:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

541-599:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 290(48.33%)

b(Buried): 310(51.67%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

T

N

181-239:

N

241-299:

N

301-359:

N

361-419:

N

421-479:

N

481-539:

N

541-599:

N

T

N(Normal): 532(88.67%)

T(Disorder): 68(11.33%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.92	91.26
TopL/2	0.81	85.13

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-spO43272/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-spO43272/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-spO43272/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-spO43272/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	99.17
TopL/2	92.33
TopL	76.67
Top2L	47.00

( Alignment file )

Alignment	Number
N	7430
Neff	381

Model comparsion

Model	TM-score
Model 2	0.8907
Model 3	0.8999
Model 4	0.9261
Model 5	0.9330
Average	0.91243

Radius Gyration

RG	RG/(2.0*L^0.4)
25.00	0.96750

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ur2	0.56139
4nm9	0.55943
4nma	0.55743
4nmb	0.55716
4nmd	0.55688

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-spO43272/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-spO43272/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-spO43272/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-spO43272/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	98.33
TopL/2	93.67
TopL	76.83
Top2L	46.67

( Alignment file )

Alignment	Number
N	7430
Neff	381

Model comparsion

Model	TM-score
Model 1	0.8907
Model 3	0.9181
Model 4	0.9059
Model 5	0.8904
Average	0.90128

Radius Gyration

RG	RG/(2.0*L^0.4)
25.30	0.97911

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4nm9	0.56501
5ur2	0.56421
4nma	0.56262
4nmd	0.56248
4nmb	0.56104

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-spO43272/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-spO43272/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-spO43272/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-spO43272/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	98.33
TopL/2	92.33
TopL	75.50
Top2L	46.33

( Alignment file )

Alignment	Number
N	7430
Neff	381

Model comparsion

Model	TM-score
Model 1	0.8999
Model 2	0.9181
Model 4	0.9146
Model 5	0.8993
Average	0.90797

Radius Gyration

RG	RG/(2.0*L^0.4)
25.23	0.97640

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ur2	0.56269
4nm9	0.56191
4nmd	0.55944
4nma	0.55874
4nmb	0.55674

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-spO43272/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-spO43272/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-spO43272/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-spO43272/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	97.50
TopL/2	92.33
TopL	77.17
Top2L	46.92

( Alignment file )

Alignment	Number
N	7430
Neff	381

Model comparsion

Model	TM-score
Model 1	0.9261
Model 2	0.9059
Model 3	0.9146
Model 5	0.9179
Average	0.91612

Radius Gyration

RG	RG/(2.0*L^0.4)
24.64	0.95356

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ur2	0.56216
4nm9	0.56012
4nma	0.55849
4nmd	0.55819
4nmb	0.55818

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-spO43272/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-spO43272/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-spO43272/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-spO43272/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	93.33
TopL	75.67
Top2L	46.00

( Alignment file )

Alignment	Number
N	7430
Neff	381

Model comparsion

Model	TM-score
Model 1	0.9330
Model 2	0.8904
Model 3	0.8993
Model 4	0.9179
Average	0.91015

Radius Gyration

RG	RG/(2.0*L^0.4)
25.03	0.96866

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5ur2	0.56128
4nm9	0.55845
4nmb	0.55734
4nma	0.55648
4nmd	0.55639

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )