Results of Structure Prediction

External Links

Blast Blast Blast Blast Blast Blast

Domain Boundary prediction ( View )

.//Dppa.domain_info.marker.jpeg

Protein sequence

>Drosophila ref(2)P-P: 1-599
1-60: MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKCDVRTFWIDAD
61-119: KDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATKQEGSSANAEAPSVDDPSNFT
121-179: IHDAVECDGCGLAPLIGFRYKCVQCSNYDLCQKCELAHKHPEHLMLRMPTNNGPGMVDAW
181-239: FTGPGLGRRSGRRSRGHCPFQETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNL
241-299: PLNTTTATAPAEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
301-359: DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDTTEGGDSGIFA
361-419: PSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSANQSNVPSANQSATPSISGSIP
421-479: DAQLETEPLNPKPSETTTETEQERRRSDSLDPEWQLIDNAYSANNSNLINLDTTNPTAAP
481-539: QEPVRDFGQLGELLRQHMNEEARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAP
541-599: DDKRTVPVYHTDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRN

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60: CCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
61-119: CCEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
121-179: EECCEEECCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
181-239: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
241-299: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
301-359: CCCCCCCCCCCCCCCCCHHHHHHCCCCCHCCCCCCECCCCCCCCCCCCCCCCCCCCCCCC
361-419: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
421-479: CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCECCCCCCCCCCCC
481-539: CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
541-599: CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCC

Solvent accessibility prediction (e: Exposed b: Buried)

1-60: EEEEBBEBBBEEEEEEEEBEBBBEEEEEBBEBBBEBBEEBBEEBEEBEEEEBEBBBEBEE
61-119: EBEBBBBBBEBBEBBBEBBEEEEEBEBBEBEEEEEEEEEEEEEEEEEEEBEEEEEEEEBB
121-179: BBEEBBBBBBEEEEBEBBBBBBBEBEEBEBBEEBEEEEEBEEBBBBBBEBEEEEEBEEBB
181-239: BEBBEBBEEEBEEBEBEBEBEEEEEEEEEEEEEEEEEEEEEEEEEEBEBBBEBBEBBEEB
241-299: EEEBEBEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
301-359: EEEEEEEEEEEEBEEBEBEEBBEEBEEEBBEEBBEBBEEBEEEBEEBBEBEEEEEEEEBE
361-419: EEBEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEBE
421-479: EEEEEEEEEBEEEEEEEEEEEEEEEEEEEEEEEBEBBBEEEEEEEEEBBEBEEEEEEEBE
481-539: EEEBEEBEEBEEEBEEEBEEEEEEEEEEEEEEEEEEEEEBBEEEEEEEEEEEEEEEBEEE
541-599: EEEEEEEBBBEEEEBEEBBEBBBEBBBBEEEBBBBEBBEEEEEEBEEBBEBBEEEEEEE

Disorder prediction (N: Normal T: Disorder)

1-60: TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
61-119: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTNNNNN
121-179: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
181-239: NNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNN
241-299: TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
301-359: TTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTTNTTTNT
361-419: TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
421-479: TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481-539: NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
541-599: TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT

Select domain

Predicted Top 1 Tertiary structure

   

Predicted Top 2 Tertiary structure

   

Predicted Top 3 Tertiary structure

   

Predicted Top 4 Tertiary structure

   

Predicted Top 5 Tertiary structure

   

References

[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.